当前解析结果
SmilChr01G004895| 统一新 Gene ID | SmilChr01G004895 |
|---|---|
| 名称 | SmilChr01G004895 |
| 描述 | serine/threonine-protein kinase TOR |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66999498 - 67033680 / - |
| NCBI Gene ID | LOC131005234 |
|---|---|
| GeneID | 131005234 |
| locus_tag | - |
| NCBI Name | LOC131005234 |
| 原始查询 | SmilChr01G004895 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase TOR |
| 产物 | serine/threonine-protein kinase TOR |
| Arabidopsis | AT1G50030 (TOR)target of rapamycin [Source:NCBI gene (formerly Entrezgene);Acc:841427] identity=79.1; qcov=0.999; evalue=0; confidence=high |
| Rice | Os05g0235300 (OsTOR)- identity=75.1; qcov=0.983; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0016242 (negative regulation of macroautophagy); GO:0031929 (TOR signaling); GO:0031931 (TORC1 complex); GO:0031932 (TORC2 complex); GO:0044877 (protein-containing complex binding) |
| KEGG | smil04136 (Autophagy - other - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00454 (PI3_PI4_kinase); PF02259 (FAT); PF02260 (FATC); PF08771 (FRB_dom); PF11865 (mTOR_dom); PF23593 (HEAT_ATR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005234 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057788060.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057788060.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057788060.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057788060.1 |
| 5 | Phragmoplast | Phragmoplast | 0.20000 | XP_057788060.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67000070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:67000409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,C11,C69,D2 |
Chr1:67005148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr1:67005946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr1:67008741 |
CAA |
* |
2bp_deletion | CDS_variant | 5 | B140,B30,C19,C68,C81 |
Chr1:67008797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr1:67008799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,C31,C54 |
Chr1:67009760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr1:67009966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B51 |
Chr1:67015856 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr1:67016262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A19,A22,A23,C37 |
Chr1:67016525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788060.1PF11865
mTOR_dom 764-932 aa
PF02259
FAT 1437-1801 aa
PF23593
HEAT_ATR 1821-1895 aa
PF08771
FRB_dom 1908-2010 aa
PF00454
PI3_PI4_kinase 2080-2327 aa
PF02260
FATC 2435-2465 aa
XP_057788061.1PF11865
mTOR_dom 764-932 aa
PF02259
FAT 1437-1801 aa
PF23593
HEAT_ATR 1821-1895 aa
PF08771
FRB_dom 1908-2010 aa
PF00454
PI3_PI4_kinase 2080-2327 aa
PF02260
FATC 2435-2465 aa
XP_057788062.1PF11865
mTOR_dom 764-932 aa
PF02259
FAT 1437-1801 aa
PF23593
HEAT_ATR 1821-1895 aa
PF08771
FRB_dom 1908-2010 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788060.1 |
Pfam | PF11865 |
mTOR_dom | Repeat | 764 | 932 | 2.5e-56 | 190.8 | Serine/threonine-protein kinase mTOR domain |
XP_057788060.1 |
Pfam | PF02259 |
FAT | Repeat | 1437 | 1801 | 1.2e-91 | 308.3 | FAT domain |
XP_057788060.1 |
Pfam | PF23593 |
HEAT_ATR | Repeat | 1821 | 1895 | 3.7e-11 | 43.5 | Serine/threonine-protein kinase ATR-like, HEAT repeats |
XP_057788060.1 |
Pfam | PF08771 |
FRB_dom | Domain | 1908 | 2010 | 5.3e-39 | 133.2 | FKBP12-rapamycin binding domain |
XP_057788060.1 |
Pfam | PF00454 |
PI3_PI4_kinase | Family | 2080 | 2327 | 3e-80 | 270.4 | Phosphatidylinositol 3- and 4-kinase |
XP_057788060.1 |
Pfam | PF02260 |
FATC | Family | 2435 | 2465 | 3.1e-14 | 53.0 | FATC domain |
XP_057788061.1 |
Pfam | PF11865 |
mTOR_dom | Repeat | 764 | 932 | 2.5e-56 | 190.8 | Serine/threonine-protein kinase mTOR domain |
XP_057788061.1 |
Pfam | PF02259 |
FAT | Repeat | 1437 | 1801 | 1.2e-91 | 308.3 | FAT domain |
XP_057788061.1 |
Pfam | PF23593 |
HEAT_ATR | Repeat | 1821 | 1895 | 3.7e-11 | 43.5 | Serine/threonine-protein kinase ATR-like, HEAT repeats |
XP_057788061.1 |
Pfam | PF08771 |
FRB_dom | Domain | 1908 | 2010 | 5.3e-39 | 133.2 | FKBP12-rapamycin binding domain |
XP_057788061.1 |
Pfam | PF00454 |
PI3_PI4_kinase | Family | 2080 | 2327 | 3e-80 | 270.4 | Phosphatidylinositol 3- and 4-kinase |
XP_057788061.1 |
Pfam | PF02260 |
FATC | Family | 2435 | 2465 | 3.1e-14 | 53.0 | FATC domain |
XP_057788062.1 |
Pfam | PF11865 |
mTOR_dom | Repeat | 764 | 932 | 8.6e-57 | 192.3 | Serine/threonine-protein kinase mTOR domain |
XP_057788062.1 |
Pfam | PF02259 |
FAT | Repeat | 1437 | 1801 | 7e-92 | 309.0 | FAT domain |
XP_057788062.1 |
Pfam | PF23593 |
HEAT_ATR | Repeat | 1821 | 1895 | 3.4e-11 | 43.7 | Serine/threonine-protein kinase ATR-like, HEAT repeats |
XP_057788062.1 |
Pfam | PF08771 |
FRB_dom | Domain | 1908 | 2010 | 4.1e-39 | 133.6 | FKBP12-rapamycin binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。