当前解析结果
SmilChr01G004971| 统一新 Gene ID | SmilChr01G004971 |
|---|---|
| 名称 | SmilChr01G004971 |
| 描述 | alpha-L-fucosidase 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67801578 - 67808064 / - |
| NCBI Gene ID | LOC131005310 |
|---|---|
| GeneID | 131005310 |
| locus_tag | - |
| NCBI Name | LOC131005310 |
| 原始查询 | SmilChr01G004971 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-L-fucosidase 2 |
| 产物 | alpha-L-fucosidase 2 |
| Arabidopsis | AT4G34260 (FUC95A)1,2-alpha-L-fucosidase [Source:NCBI gene (formerly Entrezgene);Acc:829575] identity=60.6; qcov=0.942; evalue=0; confidence=high |
| Rice | Os10g0339600- identity=56.2; qcov=0.991; evalue=0; confidence=high |
| GO | GO:0004560 (alpha-L-fucosidase activity); GO:0005975 (carbohydrate metabolic process) |
| KEGG | smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF14498 (Glyco_hyd_65N_2); PF21307 (Glyco_hydro_95_C); PF22124 (Glyco_hydro_95_cat) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005310 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057788195.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057788195.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788195.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788195.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788195.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67802604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B23 |
Chr1:67803070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C48,D11 |
Chr1:67803125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C53 |
Chr1:67803128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B95,C36 |
Chr1:67803152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B93,C3,C82 |
Chr1:67803550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B87 |
Chr1:67803675 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B129 |
Chr1:67803675 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B129 |
Chr1:67804614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:67804714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:67804740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:67804803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788195.1PF14498
Glyco_hyd_65N_2 52-311 aa
PF22124
Glyco_hydro_95_cat 339-758 aa
PF21307
Glyco_hydro_95_C 760-815 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788195.1 |
Pfam | PF14498 |
Glyco_hyd_65N_2 | Domain | 52 | 311 | 8.9e-62 | 209.8 | Glycosyl hydrolase family 65, N-terminal domain |
XP_057788195.1 |
Pfam | PF22124 |
Glyco_hydro_95_cat | Repeat | 339 | 758 | 1.8e-173 | 577.9 | Glycosyl hydrolase family 95 catalytic domain |
XP_057788195.1 |
Pfam | PF21307 |
Glyco_hydro_95_C | Domain | 760 | 815 | 8.1e-12 | 46.2 | Glycoside hydrolase family 95, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。