当前解析结果
SmilChr01G005006| 统一新 Gene ID | SmilChr01G005006 |
|---|---|
| 名称 | SmilChr01G005006 |
| 描述 | probable CoA ligase CCL6 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68107762 - 68112735 / - |
| NCBI Gene ID | LOC131005350 |
|---|---|
| GeneID | 131005350 |
| locus_tag | - |
| NCBI Name | LOC131005350 |
| 原始查询 | SmilChr01G005006 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable CoA ligase CCL6 |
| 产物 | probable CoA ligase CCL6 |
| Arabidopsis | AT1G49430 (LACS2)long-chain acyl-CoA synthetase 2 [Source:NCBI gene (formerly Entrezgene);Acc:841367] identity=66.2; qcov=0.997; evalue=0; confidence=high |
| Rice | Os11g0558300- identity=68.1; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0004467 (long-chain fatty acid-CoA ligase activity); GO:0005783 (endoplasmic reticulum); GO:0006631 (fatty acid metabolic process); GO:0010025 (wax biosynthetic process); GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00501 (AMP-binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005350 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057788255.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057788255.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057788255.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057788255.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788255.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68108155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,D5 |
Chr1:68108284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B106,C38,D8 |
Chr1:68109086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr1:68109225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,D5 |
Chr1:68109425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B28,D4 |
Chr1:68110168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,B138,D9 |
Chr1:68110514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B28,B56,B96,D4 |
Chr1:68110959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C1,C16,C4,C43 |
Chr1:68111119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B28,B56,B96,D4 |
Chr1:68111319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B28,B56,B96,D4 |
Chr1:68111321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788255.1PF00501
AMP-binding 50-479 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788255.1 |
Pfam | PF00501 |
AMP-binding | Family | 50 | 479 | 2.4e-79 | 267.6 | AMP-binding enzyme |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。