当前解析结果
SmilChr01G005020| 统一新 Gene ID | SmilChr01G005020 |
|---|---|
| 名称 | SmilChr01G005020 |
| 描述 | protein TIC 62, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68185611 - 68190211 / - |
| NCBI Gene ID | LOC131005362 |
|---|---|
| GeneID | 131005362 |
| locus_tag | - |
| NCBI Name | LOC131005362 |
| 原始查询 | SmilChr01G005020 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein TIC 62, chloroplastic |
| 产物 | protein TIC 62%2C chloroplastic |
| Arabidopsis | AT3G18890 (Tic62)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821422] identity=52.5; qcov=1.03; evalue=2.98e-179; confidence=high |
| Rice | Os10g0100300 (TIC62)- identity=55.1; qcov=0.682; evalue=1.79e-128; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF13460 (NAD_binding_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005362 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057788276.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057788276.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057788276.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057788276.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788276.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68186507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr1:68186524 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | B127,B135,B73,C32,C56,C68 |
Chr1:68186791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,B94,C26,C31 |
Chr1:68187134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B63,B78,D7 |
Chr1:68187788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,C17,C86 |
Chr1:68187912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C17 |
Chr1:68188685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B7 |
Chr1:68188885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,D9 |
Chr1:68189029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,C15,C16,C21 |
Chr1:68189237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B129,B94,C26,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788276.1PF05368
NmrA 79-248 aa
PF01370
Epimerase 81-208 aa
PF01073
3Beta_HSD 83-209 aa
PF13460
NAD_binding_10 85-293 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788276.1 |
Pfam | PF05368 |
NmrA | Family | 79 | 248 | 2.7e-12 | 47.6 | NmrA-like family |
XP_057788276.1 |
Pfam | PF01370 |
Epimerase | Family | 81 | 208 | 6.5e-08 | 33.0 | NAD dependent epimerase/dehydratase family |
XP_057788276.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 83 | 209 | 1.1e-06 | 28.6 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057788276.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 85 | 293 | 1e-34 | 120.8 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。