Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005364`

染色体: Chr01 坐标: 70864563-70870352 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005364`
名称	SmilChr01G005364
描述	probable zinc metalloprotease EGY2, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70864563 - 70870352 / `-`

ID 对照

NCBI Gene ID	`LOC131005690`
GeneID	`131005690`
locus_tag	`-`
NCBI Name	`LOC131005690`
原始查询	`SmilChr01G005364`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable zinc metalloprotease EGY2, chloroplastic
产物	probable zinc metalloprotease EGY2%2C chloroplastic
Arabidopsis	`AT5G05740` (EGY2) ethylene-dependent gravitropism-deficient and yellow-green-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:830458] identity=62.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0142100` (EGY2) - identity=64.7; qcov=0.973; evalue=0; confidence=high
GO	GO:0006508 (proteolysis)
KEGG	-
Pfam	PF02163 (Peptidase_M50); PF27677 (EGY3_M)
InterPro	-
eggNOG	-
NR	GeneID:131005690

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788704.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057788704.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057788704.1`
4	Chloroplast membrane	叶绿体膜	0.60000	`XP_057788704.1`
5	Nucleus	细胞核	0.00000	`XP_057788704.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70867459`	`TA`	`T`	1bp_deletion	frameshift_variant	23	A18,B113,B118,B126,B13,B132,B139,B19,B29,B34,B68,B70,B78,B94,B98,C17,C25,C39,C46,C56,C59,C70,D7
`Chr1:70867461`	`A`	`ATT`	2bp_insertion	stop_gained,frameshift_variant	2	A13,B117
`Chr1:70867461`	`A`	`ATT`	2bp_insertion	CDS_variant	2	A13,B117
`Chr1:70867473`	`AG`	`A`	1bp_deletion	frameshift_variant	3	B126,B68,B78
`Chr1:70867473`	`AG`	`A`	1bp_deletion	CDS_variant	3	B126,B68,B78
`Chr1:70867487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B49,D6
`Chr1:70867500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,B68
`Chr1:70867503`	`A`	`AG`	1bp_insertion	frameshift_variant	1	B126
`Chr1:70867503`	`A`	`AG`	1bp_insertion	CDS_variant	1	B126
`Chr1:70867518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:70867545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:70868411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788704.1

527 aa

264

527

EGY3_M

Peptidase_M50

PF27677 EGY3_M 159-236 aa PF02163 Peptidase_M50 287-459 aa

XP_057788705.1

526 aa

263

526

EGY3_M

Peptidase_M50

PF27677 EGY3_M 158-235 aa PF02163 Peptidase_M50 286-458 aa

XP_057788706.1

518 aa

259

518

EGY3_M

Peptidase_M50

PF27677 EGY3_M 159-236 aa PF02163 Peptidase_M50 287-459 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788704.1`	Pfam	`PF27677`	EGY3_M	Domain	159	236	7.8e-32	109.8	EGY3 middle domain
`XP_057788704.1`	Pfam	`PF02163`	Peptidase_M50	Family	287	459	3.2e-13	50.3	Peptidase family M50
`XP_057788705.1`	Pfam	`PF27677`	EGY3_M	Domain	158	235	7.7e-32	109.8	EGY3 middle domain
`XP_057788705.1`	Pfam	`PF02163`	Peptidase_M50	Family	286	458	2.9e-13	50.4	Peptidase family M50
`XP_057788706.1`	Pfam	`PF27677`	EGY3_M	Domain	159	236	7.5e-32	109.8	EGY3 middle domain
`XP_057788706.1`	Pfam	`PF02163`	Peptidase_M50	Family	287	459	3.1e-13	50.3	Peptidase family M50

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932723.1
ATTAATCAAGAAAAACAAAATATTACCATACCATTTACATTTTGGCGGTGATGATTCCACTTCAGTGGATAAGATAGTTCTAACTCGTATACAAGAATTCCCTCTCCAAAACTCACCAATTTTTTTTGGCAATTCCGAGCTAAACACTTGGAATTTATTTTTTCCTCTTCACACAATCAAACCCTGATTGCCCGATTCCGATGTTGGCGAGATCCAATTGACTACTGAATTCCCATAGAATTTCGTTTCGAATTCTGCGG...

XM_057932721.1
GCTACTCGGTGAAGGAAATCTAATCAGATTTTAGGCGCCTTTGTATCTCTAACCGAAATAACGAACCCACCATAATCATTAATCAAGAAAAACAAAATATTACCATACCATTTACATTTTGGCGGTGATGATTCCACTTCAGTGGATAAGATAGTTCTAACTCGTATACAAGAATTCCCTCTCCAAAACTCACCAATTTTTTTTGGCAATTCCGAGCTAAACACTTGGAATTTATTTTTTCCTCTTCACACAATCAAACC...

CDS

3 records

下载 CDS FASTA

LOC131005690
ATGAACTTATCGGCGAGTTTTGGCGGGAATCTCGTCCTTCCCGTTTCTCGCTGTGATTCTTGCAGTCGAGTTTGCTTTTTGTCTCCTGCGACAGTGGGATGGAAGTTGAGCTCTCGCTGCTTGTTGAGGAAAAATATGAGGGTAATTAGGAGAGTTAGTGAGACAGAGGAGCAGCCTGAGAGTAATAACGAGGAGGAAAGAAACTCTCATGGAGAAGAAGGATTTGTGGCGAGTGATTCAACTGTCTCGAATGAGTCCAA...

Protein

3 records

下载 Protein FASTA

XP_057788704.1
MNLSASFGGNLVLPVSRCDSCSRVCFLSPATVGWKLSSRCLLRKNMRVIRRVSETEEQPESNNEEERNSHGEEGFVASDSTVSNESKQDSQNADNNQSAESGIFETKDLVNNVADGTSDAQVKSEDDKDVQITSGSPLPGLKQQEFDESIRISKETIDVLKDQIFGFDTFFITSQEPYEGGVLFKGNLRGQAAKSYEKIATRMEDKFGDLYKLFLLINPEDDKPVAVVVPRKTLQPDTTAVPEWFAAGAFGLVTVFTLLL...

XP_057788705.1
MNLSASFGGNLVLPVSRCDSCSRVCFLSPATVGWKLSSRCLLRKNMRVIRRVSETEEQPESNNEEERNSHGEEGFVASDSTVSNESKQDSQNADNNQSAESGIFETKDLVNNVADGTSDAQVKSEDDKDVQITSGSPLPGLKQEFDESIRISKETIDVLKDQIFGFDTFFITSQEPYEGGVLFKGNLRGQAAKSYEKIATRMEDKFGDLYKLFLLINPEDDKPVAVVVPRKTLQPDTTAVPEWFAAGAFGLVTVFTLLLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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