当前解析结果
SmilChr01G005453| 统一新 Gene ID | SmilChr01G005453 |
|---|---|
| 名称 | SmilChr01G005453 |
| 描述 | aspartic proteinase 36-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71575679 - 71580910 / - |
| NCBI Gene ID | LOC131005777 |
|---|---|
| GeneID | 131005777 |
| locus_tag | - |
| NCBI Name | LOC131005777 |
| 原始查询 | SmilChr01G005453 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartic proteinase 36-like |
| 产物 | aspartic proteinase 36-like |
| Arabidopsis | AT1G05840 (AT1G05840)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:837094] identity=51.9; qcov=0.938; evalue=1.77e-169; confidence=high |
| Rice | Os02g0473200 (OsAP19)- identity=54.2; qcov=0.901; evalue=7.04e-171; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005777 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788841.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057788841.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788841.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788841.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788841.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71575918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B20,B40,B66 |
Chr1:71575980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B66,C65 |
Chr1:71575994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B24,B82 |
Chr1:71575995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B55,B76,B83,C23,D11 |
Chr1:71576356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B55,B76,B83,C23 |
Chr1:71576395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr1:71577983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B35,C34 |
Chr1:71577985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B24,B82,C75,C82 |
Chr1:71577986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,C35,C74 |
Chr1:71578031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C37 |
Chr1:71578046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:71578088 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B49,B50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788841.1PF14543
TAXi_N 77-260 aa
PF00026
Asp 77-432 aa
PF14541
TAXi_C 278-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788841.1 |
Pfam | PF14543 |
TAXi_N | Domain | 77 | 260 | 2.5e-39 | 136.0 | Xylanase inhibitor N-terminal |
XP_057788841.1 |
Pfam | PF00026 |
Asp | Domain | 77 | 432 | 5e-32 | 112.3 | Eukaryotic aspartyl protease |
XP_057788841.1 |
Pfam | PF14541 |
TAXi_C | Domain | 278 | 431 | 4.2e-17 | 63.1 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。