当前解析结果
SmilChr01G005454| 统一新 Gene ID | SmilChr01G005454 |
|---|---|
| 名称 | SmilChr01G005454 |
| 描述 | sabinene synthase 1, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71586484 - 71588692 / + |
| NCBI Gene ID | LOC131005788 |
|---|---|
| GeneID | 131005788 |
| locus_tag | - |
| NCBI Name | LOC131005788 |
| 原始查询 | SmilChr01G005454 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sabinene synthase 1, chloroplastic-like |
| 产物 | sabinene synthase 1%2C chloroplastic-like |
| Arabidopsis | AT3G25820 (TPS-CIN)terpene synthase-like sequence-1,8-cineole [Source:NCBI gene (formerly Entrezgene);Acc:822175] identity=38.9; qcov=1.02; evalue=1.39e-145; confidence=medium |
| Rice | Os03g0347900- identity=32.3; qcov=0.831; evalue=9.25e-70; confidence=low |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | - |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005788 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057788855.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057788855.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057788855.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788855.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788855.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71586604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:71586640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr1:71586672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr1:71586687 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B140,C82 |
Chr1:71586687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr1:71586816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:71586840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:71586955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:71586962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B128,B75,B88,C10 |
Chr1:71587218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B128,B88,C10,C48 |
Chr1:71587322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B63 |
Chr1:71587393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788855.1PF01397
Terpene_synth 54-234 aa
PF03936
Terpene_synth_C 292-529 aa
PF19086
Terpene_syn_C_2 333-529 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788855.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 54 | 234 | 6.9e-42 | 144.0 | Terpene synthase, N-terminal domain |
XP_057788855.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 292 | 529 | 2.8e-80 | 269.8 | Terpene synthase family, metal binding domain |
XP_057788855.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 333 | 529 | 3.5e-48 | 164.7 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。