当前解析结果
SmilChr01G005620| 统一新 Gene ID | SmilChr01G005620 |
|---|---|
| 名称 | SmilChr01G005620 |
| 描述 | protein NEDD1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72690541 - 72694629 / + |
| NCBI Gene ID | LOC131005874 |
|---|---|
| GeneID | 131005874 |
| locus_tag | - |
| NCBI Name | LOC131005874 |
| 原始查询 | SmilChr01G005620 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NEDD1-like |
| 产物 | protein NEDD1-like |
| Arabidopsis | AT5G05970 (NEDD1)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830483] identity=47.1; qcov=1.1; evalue=0; confidence=high |
| Rice | Os09g0267500 (OsWD40-168)- identity=46.4; qcov=1.11; evalue=0; confidence=high |
| GO | GO:0000919 (cell plate assembly); GO:0005515 (protein binding); GO:0005828 (kinetochore microtubule); GO:0010968 (regulation of microtubule nucleation); GO:0032467 (positive regulation of cytokinesis); GO:0060236 (regulation of mitotic spindle organization); GO:0140496 (gamma-tubulin complex binding); GO:2000694 (regulation of phragmoplast microtubule organization) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF23098 (Beta-prop_NOL10_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005874 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Phragmoplast | Phragmoplast | 0.60000 | XP_057788962.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057788962.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057788962.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057788962.1 |
| 5 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057788962.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72690759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:72691683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr1:72691786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B44,C41,C87,D5 |
Chr1:72692025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:72692082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B137,C23 |
Chr1:72692402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B137,C23 |
Chr1:72692455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:72692671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:72692714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B112 |
Chr1:72692732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,C11,C69 |
Chr1:72692755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B139,B28,C2 |
Chr1:72693013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788962.1PF00400
WD40 41-67 aa
PF23098
Beta-prop_NOL10_N 149-316 aa
PF00400
WD40 178-202 aa
PF00400
WD40 214-244 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788962.1 |
Pfam | PF00400 |
WD40 | Repeat | 41 | 67 | 1e-19 | 70.8 | WD domain, G-beta repeat |
XP_057788962.1 |
Pfam | PF23098 |
Beta-prop_NOL10_N | Repeat | 149 | 316 | 3.1e-12 | 47.0 | Nucleolar protein 10-like, N-terminal domain |
XP_057788962.1 |
Pfam | PF00400 |
WD40 | Repeat | 178 | 202 | 1e-19 | 70.8 | WD domain, G-beta repeat |
XP_057788962.1 |
Pfam | PF00400 |
WD40 | Repeat | 214 | 244 | 1e-19 | 70.8 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。