当前解析结果
SmilChr02G000137| 统一新 Gene ID | SmilChr02G000137 |
|---|---|
| 名称 | SmilChr02G000137 |
| 描述 | mitotic checkpoint protein BUB3.1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 1860202 - 1861492 / + |
| NCBI Gene ID | LOC131012555 |
|---|---|
| GeneID | 131012555 |
| locus_tag | - |
| NCBI Name | LOC131012555 |
| 原始查询 | SmilChr02G000137 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitotic checkpoint protein BUB3.1-like |
| 产物 | mitotic checkpoint protein BUB3.1-like |
| Arabidopsis | AT3G19590 (BUB3.1)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821496] identity=83.7; qcov=0.785; evalue=2.09e-149; confidence=high |
| Rice | Os03g0448600 (OsWD40-76)- identity=84; qcov=0.778; evalue=3.38e-150; confidence=high |
| GO | GO:0000776 (kinetochore); GO:0007094 (mitotic spindle assembly checkpoint signaling); GO:0009524 (phragmoplast); GO:0033597 (mitotic checkpoint complex); GO:0043130 (ubiquitin binding); GO:1990298 (bub1-bub3 complex) |
| KEGG | - |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012555 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleoplasm | 核质 | 1.00000 | XP_057796526.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057796526.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057796526.1 |
| 4 | Cytoplasm | 细胞质 | 0.80000 | XP_057796526.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057796526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:1860452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,C3,C38 |
Chr2:1860459 |
AC |
A |
1bp_deletion | frameshift_variant | 3 | C48,D10,D11 |
Chr2:1860459 |
AC |
A |
1bp_deletion | CDS_variant | 3 | C48,D10,D11 |
Chr2:1860470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr2:1860486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B56,B80,C84 |
Chr2:1860488 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B13 |
Chr2:1860488 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B13 |
Chr2:1860501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr2:1860518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:1860524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:1860619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr2:1860628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796526.1PF00400
WD40 17-46 aa
PF00400
WD40 58-83 aa
PF00400
WD40 94-127 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796526.1 |
Pfam | PF00400 |
WD40 | Repeat | 17 | 46 | 4.4e-18 | 65.6 | WD domain, G-beta repeat |
XP_057796526.1 |
Pfam | PF00400 |
WD40 | Repeat | 58 | 83 | 4.4e-18 | 65.6 | WD domain, G-beta repeat |
XP_057796526.1 |
Pfam | PF00400 |
WD40 | Repeat | 94 | 127 | 4.4e-18 | 65.6 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。