当前解析结果
SmilChr02G000365| 统一新 Gene ID | SmilChr02G000365 |
|---|---|
| 名称 | SmilChr02G000365 |
| 描述 | phytochrome C-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 4667837 - 4672492 / - |
| NCBI Gene ID | LOC131012709 |
|---|---|
| GeneID | 131012709 |
| locus_tag | - |
| NCBI Name | LOC131012709 |
| 原始查询 | SmilChr02G000365 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phytochrome C-like |
| 产物 | phytochrome C-like |
| Arabidopsis | AT5G35840 (PHYC)phytochrome C [Source:NCBI gene (formerly Entrezgene);Acc:833570] identity=60.5; qcov=0.996; evalue=0; confidence=high |
| Rice | Os03g0752100 (PHYC)- identity=64.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0000155 (phosphorelay sensor kinase activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009584 (detection of visible light); GO:0009585 (red, far-red light phototransduction); GO:0009881 (photoreceptor activity); GO:0017006 (protein-tetrapyrrole linkage); GO:0042803 (protein homodimerization activity) |
| KEGG | - |
| Pfam | PF00360 (PHY); PF00512 (HisKA); PF00989 (PAS); PF01590 (GAF); PF02518 (HATPase_c); PF08446 (PAS_2); PF08448 (PAS_4); PF13426 (PAS_9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012709 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057796679.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057796679.1 |
| 3 | Lipid droplet | 脂滴 | 0.20000 | XP_057796679.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796679.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796679.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:4668069 |
C |
CT |
1bp_insertion | frameshift_variant | 83 | A13,A22,A23,A3,A6,A7,B102,B105,B112,B113,B118,B123,B125,B128,B13,B130,B131,B16,B20,B21,B23,B24,B26,B32,B36,B38,B39,B40,B49,B54,B57,B58,B6,B60,B62,B63,B69,B70,B72,B73,B75,B79,B83,B88,B9,B90,B92,B97,B98,C1,C10,C11,C15,C16,C17,C18,C21,C22,C24,C26,C3,C35,C4,C43,C48,C52,C62,C63,C64,C65,C66,C67,C69,C72,C73,C75,C8,C80,C87,C9,D11,D5,D7 |
Chr2:4668070 |
TA |
T |
1bp_deletion | frameshift_variant | 83 | A13,A22,A23,A3,A6,A7,B102,B105,B112,B113,B118,B123,B125,B128,B13,B130,B131,B16,B20,B21,B23,B24,B26,B32,B36,B38,B39,B40,B49,B54,B57,B58,B6,B60,B62,B63,B69,B70,B72,B73,B75,B79,B83,B88,B9,B90,B92,B97,B98,C1,C10,C11,C15,C16,C17,C18,C21,C22,C24,C26,C3,C35,C4,C43,C48,C52,C62,C63,C64,C65,C66,C67,C69,C72,C73,C75,C8,C80,C87,C9,D11,D5,D7 |
Chr2:4668142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr2:4668187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:4668568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:4668814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:4669112 |
CG |
C |
1bp_deletion | frameshift_variant | 155 | A1,A10,A11,A14,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A5,A8,A9,B1,B100,B103,B104,B105,B107,B108,B109,B11,B110,B111,B114,B115,B117,B119,B12,B120,B121,B122,B123,B126,B127,B128,B13,B130,B132,B133,B135,B138,B14,B140,B15,B17,B18,B2,B20,B22,B23,B25,B27,B29,B3,B30,B31,B33,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B48,B50,B52,B53,B54,B55,B58,B6,B60,B61,B62,B64,B66,B67,B68,B69,B7,B71,B75,B77,B8,B82,B83,B85,B89,B9,B91,B93,B94,B95,B97,B98,B99,C10,C11,C14,C15,C16,C19,C20,C22,C23,C25,C26,C27,C28,C31,C36,C4,C40,C42,C45,C5,C53,C55,C56,C57,C58,C59,C60,C61,C62,C65,C69,C7,C70,C71,C72,C75,C77,C78,C79,C83,C84,C86,D11,D2,D3,D4,D5,D6,D8 |
Chr2:4669113 |
G |
GA |
1bp_insertion | frameshift_variant | 3 | B81,B86,C67 |
Chr2:4669113 |
G |
GA |
1bp_insertion | CDS_variant | 3 | B81,B86,C67 |
Chr2:4669143 |
C |
CT |
1bp_insertion | frameshift_variant | 41 | A13,A2,A3,A7,B102,B130,B131,B20,B21,B32,B38,B39,B40,B45,B54,B62,B69,B70,B72,B73,B9,B97,C1,C10,C11,C15,C17,C18,C22,C24,C3,C4,C52,C62,C63,C65,C67,C69,C75,C87,C9 |
Chr2:4669147 |
TC |
T |
1bp_deletion | frameshift_variant | 41 | A13,A2,A3,A7,B102,B130,B131,B20,B21,B32,B38,B39,B40,B45,B54,B62,B69,B70,B72,B73,B9,B97,C1,C10,C11,C15,C17,C18,C22,C24,C3,C4,C52,C62,C63,C65,C67,C69,C75,C87,C9 |
Chr2:4669181 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796679.1PF08446
PAS_2 65-181 aa
PF01590
GAF 217-393 aa
PF00360
PHY 407-580 aa
PF00989
PAS 612-726 aa
PF08448
PAS_4 620-727 aa
PF13426
PAS_9 625-727 aa
PF00989
PAS 744-864 aa
PF00512
HisKA 891-950 aa
PF02518
HATPase_c 999-1119 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796679.1 |
Pfam | PF08446 |
PAS_2 | Domain | 65 | 181 | 1.2e-36 | 126.4 | PAS fold |
XP_057796679.1 |
Pfam | PF01590 |
GAF | Domain | 217 | 393 | 9e-18 | 65.8 | GAF domain |
XP_057796679.1 |
Pfam | PF00360 |
PHY | Domain | 407 | 580 | 2.4e-59 | 200.5 | Phytochrome region |
XP_057796679.1 |
Pfam | PF00989 |
PAS | Domain | 612 | 726 | 9.2e-36 | 123.0 | PAS fold |
XP_057796679.1 |
Pfam | PF08448 |
PAS_4 | Domain | 620 | 727 | 4.5e-10 | 40.5 | PAS fold |
XP_057796679.1 |
Pfam | PF13426 |
PAS_9 | Domain | 625 | 727 | 1.6e-07 | 32.3 | PAS domain |
XP_057796679.1 |
Pfam | PF00989 |
PAS | Domain | 744 | 864 | 9.2e-36 | 123.0 | PAS fold |
XP_057796679.1 |
Pfam | PF00512 |
HisKA | Domain | 891 | 950 | 1.5e-06 | 28.8 | His Kinase A (phospho-acceptor) domain |
XP_057796679.1 |
Pfam | PF02518 |
HATPase_c | Domain | 999 | 1119 | 1.8e-12 | 48.4 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。