当前解析结果
SmilChr02G000623| 统一新 Gene ID | SmilChr02G000623 |
|---|---|
| 名称 | SmilChr02G000623 |
| 描述 | probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 9216415 - 9217681 / - |
| NCBI Gene ID | LOC131012947 |
|---|---|
| GeneID | 131012947 |
| locus_tag | - |
| NCBI Name | LOC131012947 |
| 原始查询 | SmilChr02G000623 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B |
| 产物 | probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B |
| Arabidopsis | AT1G61790 (AT1G61790)Oligosaccharyltransferase complex/magnesium transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:842476] identity=64.5; qcov=0.91; evalue=1.73e-150; confidence=high |
| Rice | Os03g0565100 (OST3)- identity=60.4; qcov=0.91; evalue=9.13e-141; confidence=high |
| GO | GO:0008250 (oligosaccharyltransferase complex); GO:0018279 (GO:0018279) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04756 (OST3_OST6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057796912.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057796912.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796912.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796912.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796912.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:9216737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B31,B57,C49 |
Chr2:9216740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,B29,B97,C5 |
Chr2:9217000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B45,B90,B92,C12 |
Chr2:9217016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:9217488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr2:9217559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B40,C78,D5 |
Chr2:9217579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B99,C14,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796912.1PF04756
OST3_OST6 37-333 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796912.1 |
Pfam | PF04756 |
OST3_OST6 | Family | 37 | 333 | 2.6e-78 | 264.1 | OST3 / OST6 family, transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。