当前解析结果
SmilChr02G001769| 统一新 Gene ID | SmilChr02G001769 |
|---|---|
| 名称 | SmilChr02G001769 |
| 描述 | uncharacterized SmilChr02G001769 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32443321 - 32453464 / + |
| NCBI Gene ID | LOC131008315 |
|---|---|
| GeneID | 131008315 |
| locus_tag | - |
| NCBI Name | LOC131008315 |
| 原始查询 | SmilChr02G001769 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=25.9; qcov=0.717; evalue=1.35e-57; confidence=low |
| Rice | Os12g0597300- identity=29.4; qcov=0.724; evalue=5.87e-68; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008315 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791185.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791185.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791185.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791185.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791185.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32443323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B24,B52,D11 |
Chr2:32443373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:32443374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:32443412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:32443426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,C20 |
Chr2:32443437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:32443441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:32443449 |
C |
CG |
1bp_insertion | frameshift_variant | 7 | B30,B48,C29,C33,C36,C49,C6 |
Chr2:32451152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C13 |
Chr2:32451188 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B103,B30,C37,C71 |
Chr2:32451188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B30,C37,C71 |
Chr2:32451211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,C43,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791185.1PF03108
DBD_Tnp_Mut 215-256 aa
PF10551
MULE 395-489 aa
PF00872
Transposase_mut 412-564 aa
PF04434
SWIM 640-670 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791185.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 215 | 256 | 3.4e-06 | 27.3 | MuDR family transposase |
XP_057791185.1 |
Pfam | PF10551 |
MULE | Domain | 395 | 489 | 4.6e-19 | 69.3 | MULE transposase domain |
XP_057791185.1 |
Pfam | PF00872 |
Transposase_mut | Family | 412 | 564 | 8.8e-11 | 42.0 | Transposase, Mutator family |
XP_057791185.1 |
Pfam | PF04434 |
SWIM | Domain | 640 | 670 | 8.2e-08 | 32.3 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。