当前解析结果
SmilChr02G002760| 统一新 Gene ID | SmilChr02G002760 |
|---|---|
| 名称 | SmilChr02G002760 |
| 描述 | probable serine/threonine-protein kinase PBL15 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47655880 - 47663966 / - |
| NCBI Gene ID | LOC131011790 |
|---|---|
| GeneID | 131011790 |
| locus_tag | - |
| NCBI Name | LOC131011790 |
| 原始查询 | SmilChr02G002760 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase PBL15 |
| 产物 | probable serine/threonine-protein kinase PBL15 |
| Arabidopsis | AT1G55200 (AT1G55200)kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841963] identity=35.5; qcov=1.08; evalue=5.63e-108; confidence=medium |
| Rice | Os01g0881966- identity=48.8; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011790 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795613.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057795613.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795613.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795613.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795613.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47656105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,C12 |
Chr2:47658181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B60 |
Chr2:47658610 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B35 |
Chr2:47658610 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B35 |
Chr2:47658643 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C41 |
Chr2:47658643 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C41 |
Chr2:47658730 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr2:47658730 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B74 |
Chr2:47658881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:47659789 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B21 |
Chr2:47659789 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B21 |
Chr2:47661913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795613.1PF00069
Pkinase 318-582 aa
PF07714
PK_Tyr_Ser-Thr 318-582 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795613.1 |
Pfam | PF00069 |
Pkinase | Domain | 318 | 582 | 1.1e-38 | 133.9 | Protein kinase domain |
XP_057795613.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 318 | 582 | 2.8e-37 | 129.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。