Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003601`

染色体: Chr02 坐标: 57243195-57246859 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003601`
名称	SmilChr02G003601
描述	probable jasmonic acid carboxyl methyltransferase 2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	57243195 - 57246859 / `-`

ID 对照

NCBI Gene ID	`LOC131010563`
GeneID	`131010563`
locus_tag	`-`
NCBI Name	`LOC131010563`
原始查询	`SmilChr02G003601`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable jasmonic acid carboxyl methyltransferase 2
产物	probable jasmonic acid carboxyl methyltransferase 2
Arabidopsis	`AT1G19640` (JMT) jasmonic acid carboxyl methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:838551] identity=53.4; qcov=1.05; evalue=1.54e-130; confidence=high
Rice	`Os01g0701700` - identity=41.9; qcov=0.997; evalue=4.1e-97; confidence=medium
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0032259 (methylation)
KEGG	smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF03492 (Methyltransf_7)
InterPro	-
eggNOG	-
NR	GeneID:131010563

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057794107.1`
2	Cytosol	细胞质基质	1.00000	`XP_057794107.1`
3	Nucleus	细胞核	0.60000	`XP_057794107.1`
4	Chromosome	染色体	0.00000	`XP_057794107.1`
5	Centromere	着丝粒	0.00000	`XP_057794107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:57246006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr2:57246201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr2:57246353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B13,C13
`Chr2:57246435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,C29,C6
`Chr2:57246556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794107.1

371 aa

186

371

Methyltransf_7

PF03492 Methyltransf_7 6-370 aa

XP_057794108.1

369 aa

184

369

Methyltransf_7

PF03492 Methyltransf_7 6-368 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794107.1`	Pfam	`PF03492`	Methyltransf_7	Domain	6	370	2.4e-139	465.1	SAM dependent carboxyl methyltransferase
`XP_057794108.1`	Pfam	`PF03492`	Methyltransf_7	Domain	6	368	1.5e-136	455.8	SAM dependent carboxyl methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938125.1
GATCCACTGATTCACATGTAAAGCTATCCTGTTGATGATATTTGTGATACCTTCAAGTTTTTTTCTTTGAGGGCAATCCTTCAAGCAAGTAAAAACCCTTGTTTCCAAAACACACACAGAATTCAAGGATTCCTATACCAATATTACTACAAATGGGAGAATTGATGCAGATTTTTCACATGAACAAAGGAGAAGGAGAAGCTAGCTATGCCAAAAACTGCACTATTCAAATAATATCATTGGGCAAGACAGTGATGGAG...

XM_057938124.1
GATTCACATGTAAAGCTATCCTGTTGATGATATTTGTGATACCTTCAAGTTTTTTTCTTTGAGGGCAATCCTTCAAGCAAGTAAAAACCCTTGTTTCCAAAACACACACAGAATTCAAGGATTCCTATACCAATATTACTACAAATGGGAGAATTGATGCAGATTTTTCACATGAACAAAGGAGAAGGAGAAGCTAGCTATGCCAAAAACTGCACTATTCAAAGGCAGATAATATCATTGGGCAAGACAGTGATGGAGAA...

CDS

2 records

下载 CDS FASTA

LOC131010563
ATGGGAGAATTGATGCAGATTTTTCACATGAACAAAGGAGAAGGAGAAGCTAGCTATGCCAAAAACTGCACTATTCAAATAATATCATTGGGCAAGACAGTGATGGAGAAAGCCGTGTACGATGCAGTAAAAAACAGTCTCCCAAAGAGCATGGGAATAGCCGATCTGGGGTGCTCCTCTGGGCCTAACACTTTGATGGCCATCTCCGAGATCATCGACGATGTTCGCGACACGTGTCACGAGATCGGCCTCCCCCTGCC...

LOC131010563
ATGGGAGAATTGATGCAGATTTTTCACATGAACAAAGGAGAAGGAGAAGCTAGCTATGCCAAAAACTGCACTATTCAAAGGCAGATAATATCATTGGGCAAGACAGTGATGGAGAAAGCCGTGTACGATGCAGTAAAAAACAGTCTCCCAAAGAGCATGGGAATAGCCGATCTGGGGTGCTCCTCTGGGCCTAACACTTTGATGGCCATCTCCGAGATCATCGACGATGTTCGCGACACGTGTCACGAGATCGGCCTCCC...

Protein

2 records

下载 Protein FASTA

XP_057794107.1
MGELMQIFHMNKGEGEASYAKNCTIQRQIISLGKTVMEKAVYDAVKNSLPKSMGIADLGCSSGPNTLMAISEIIDDVRDTCHEIGLPLPELRVALNDLPGNDFNYVFMSLADFNRNLNNNKGIPSDRCFISAMPGSFYGRLFPINSLHFVHSSSSLHWLSQVPVGLDHNSGKHLNKGKIYISKTSPECVVKAYLRQFEKDMFVFLRSRAAEVVPGGTMVLSFMGRASPLASAEVGTHQWELLAHALMAMAKEEVVEEEKI...

XP_057794108.1
MGELMQIFHMNKGEGEASYAKNCTIQIISLGKTVMEKAVYDAVKNSLPKSMGIADLGCSSGPNTLMAISEIIDDVRDTCHEIGLPLPELRVALNDLPGNDFNYVFMSLADFNRNLNNNKGIPSDRCFISAMPGSFYGRLFPINSLHFVHSSSSLHWLSQVPVGLDHNSGKHLNKGKIYISKTSPECVVKAYLRQFEKDMFVFLRSRAAEVVPGGTMVLSFMGRASPLASAEVGTHQWELLAHALMAMAKEEVVEEEKIDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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