当前解析结果
SmilChr02G003686| 统一新 Gene ID | SmilChr02G003686 |
|---|---|
| 名称 | SmilChr02G003686 |
| 描述 | xylulose kinase 2 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58224484 - 58228396 / + |
| NCBI Gene ID | LOC131010639 |
|---|---|
| GeneID | 131010639 |
| locus_tag | - |
| NCBI Name | LOC131010639 |
| 原始查询 | SmilChr02G003686 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | xylulose kinase 2 |
| 产物 | xylulose kinase 2 |
| Arabidopsis | AT5G49650 (XK-2)xylulose kinase-2 [Source:NCBI gene (formerly Entrezgene);Acc:835027] identity=72.6; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0640200 (OJ1340_C08.135)- identity=72.7; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0004856 (D-xylulokinase activity); GO:0005829 (cytosol); GO:0005997 (xylulose metabolic process); GO:0042732 (D-xylose metabolic process) |
| KEGG | smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00370 (FGGY_N); PF02782 (FGGY_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010639 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057794247.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057794247.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057794247.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794247.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794247.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58224813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B91,C49,C87,D2 |
Chr2:58225152 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B118 |
Chr2:58225152 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B118 |
Chr2:58225292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:58225384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,C49 |
Chr2:58225424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:58225526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B18,B22,B26,B7 |
Chr2:58225556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B84,D1 |
Chr2:58225683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B133,C25,C81 |
Chr2:58227445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B35,B95,C8,D6 |
Chr2:58227635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A20,B140,B79,C43 |
Chr2:58227636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794247.1PF00370
FGGY_N 139-288 aa
PF02782
FGGY_C 299-496 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794247.1 |
Pfam | PF00370 |
FGGY_N | Domain | 139 | 288 | 7.1e-21 | 75.6 | FGGY family of carbohydrate kinases, N-terminal domain |
XP_057794247.1 |
Pfam | PF02782 |
FGGY_C | Domain | 299 | 496 | 4.9e-26 | 92.5 | FGGY family of carbohydrate kinases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。