当前解析结果
SmilChr02G005088| 统一新 Gene ID | SmilChr02G005088 |
|---|---|
| 名称 | SmilChr02G005088 |
| 描述 | ATP-dependent DNA helicase PIF1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72483388 - 72484959 / + |
| NCBI Gene ID | LOC131009957 |
|---|---|
| GeneID | 131009957 |
| locus_tag | - |
| NCBI Name | LOC131009957 |
| 原始查询 | SmilChr02G005088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase PIF1-like |
| 产物 | ATP-dependent DNA helicase PIF1-like |
| Arabidopsis | -- |
| Rice | Os04g0357300- identity=22.8; qcov=0.654; evalue=3.14e-08; confidence=weak |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF13245 (AAA_19); PF13401 (AAA_22); PF13604 (AAA_30); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009957 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057793337.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057793337.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793337.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793337.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793337.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72483621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B37,C79 |
Chr2:72483675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr2:72483690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B37,C79 |
Chr2:72483799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:72484176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:72484210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr2:72484234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,B58,B91,C55 |
Chr2:72484248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:72484329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr2:72484388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr2:72484478 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | C43 |
Chr2:72484478 |
A |
AC |
1bp_insertion | CDS_variant | 1 | C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793337.1PF13604
AAA_30 65-187 aa
PF05970
PIF1 65-262 aa
PF13245
AAA_19 68-181 aa
PF13401
AAA_22 79-179 aa
PF21530
Pif1_2B_dom 342-380 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793337.1 |
Pfam | PF13604 |
AAA_30 | Domain | 65 | 187 | 3.9e-12 | 47.1 | AAA domain |
XP_057793337.1 |
Pfam | PF05970 |
PIF1 | Family | 65 | 262 | 1.6e-37 | 130.0 | PIF1-like helicase |
XP_057793337.1 |
Pfam | PF13245 |
AAA_19 | Domain | 68 | 181 | 1.1e-12 | 49.0 | AAA domain |
XP_057793337.1 |
Pfam | PF13401 |
AAA_22 | Domain | 79 | 179 | 4e-07 | 31.1 | AAA domain |
XP_057793337.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 342 | 380 | 2.1e-07 | 31.3 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。