当前解析结果
SmilChr02G005274| 统一新 Gene ID | SmilChr02G005274 |
|---|---|
| 名称 | SmilChr02G005274 |
| 描述 | probable galacturonosyltransferase 10 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73813951 - 73818227 / - |
| NCBI Gene ID | LOC131009215 |
|---|---|
| GeneID | 131009215 |
| locus_tag | - |
| NCBI Name | LOC131009215 |
| 原始查询 | SmilChr02G005274 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable galacturonosyltransferase 10 |
| 产物 | probable galacturonosyltransferase 10 |
| Arabidopsis | AT2G20810 (GAUT10)galacturonosyltransferase 10 [Source:NCBI gene (formerly Entrezgene);Acc:816611] identity=78.4; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0636100- identity=70.1; qcov=0.933; evalue=0; confidence=high |
| GO | GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01501 (Glyco_transf_8); PF25557 (GAUT_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009215 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057792453.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057792453.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057792453.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792453.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792453.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73814228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr2:73814330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr2:73814459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:73814498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:73814543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B50,D11 |
Chr2:73814651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B69,C60,D5,D7 |
Chr2:73814663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:73814683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C54,C82 |
Chr2:73814837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:73814867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B110,B140,B67,C48 |
Chr2:73814909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B4,B49 |
Chr2:73814957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B140,B67,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792453.1PF25557
GAUT_1 72-120 aa
PF01501
Glyco_transf_8 236-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792453.1 |
Pfam | PF25557 |
GAUT_1 | Domain | 72 | 120 | 1.1e-07 | 32.7 | Galacturonosyltransferase domain 1 |
XP_057792453.1 |
Pfam | PF01501 |
Glyco_transf_8 | Family | 236 | 508 | 1.1e-69 | 235.5 | Glycosyl transferase family 8 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。