当前解析结果
SmilChr02G005458| 统一新 Gene ID | SmilChr02G005458 |
|---|---|
| 名称 | SmilChr02G005458 |
| 描述 | triacylglycerol lipase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74897764 - 74901278 / + |
| NCBI Gene ID | LOC131009419 |
|---|---|
| GeneID | 131009419 |
| locus_tag | - |
| NCBI Name | LOC131009419 |
| 原始查询 | SmilChr02G005458 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | triacylglycerol lipase 2-like |
| 产物 | triacylglycerol lipase 2-like |
| Arabidopsis | AT5G14180 (MPL1)Myzus persicae-induced lipase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831268] identity=50; qcov=0.923; evalue=1.05e-141; confidence=high |
| Rice | Os04g0280600 (AM20)- identity=50.2; qcov=1.04; evalue=5.57e-140; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00561 (Abhydrolase_1); PF04083 (Abhydro_lipase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009419 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057792718.1 |
| 2 | Lysosome | 溶酶体 | 0.60000 | XP_057792718.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057792718.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792718.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792718.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74897846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,C78 |
Chr2:74897903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C58 |
Chr2:74898625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B120,C8 |
Chr2:74898692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:74898704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74898727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,D6 |
Chr2:74898737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:74898868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C78,D10,D6 |
Chr2:74898926 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B3 |
Chr2:74898926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr2:74900335 |
A |
AG |
1bp_insertion | frameshift_variant | 6 | A3,B16,B28,B3,B94,C48 |
Chr2:74900736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792718.1PF04083
Abhydro_lipase 42-99 aa
PF00561
Abhydrolase_1 82-201 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792718.1 |
Pfam | PF04083 |
Abhydro_lipase | Family | 42 | 99 | 5.8e-18 | 64.9 | Partial alpha/beta-hydrolase lipase region |
XP_057792718.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 82 | 201 | 2.3e-10 | 41.3 | alpha/beta hydrolase fold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。