Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005502`

染色体: Chr02 坐标: 75156160-75159521 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005502`
名称	SmilChr02G005502
描述	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75156160 - 75159521 / `+`

ID 对照

NCBI Gene ID	`LOC131009457`
GeneID	`131009457`
locus_tag	`-`
NCBI Name	`LOC131009457`
原始查询	`SmilChr02G005502`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
产物	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
Arabidopsis	`AT3G59060` (PIL6) phytochrome interacting factor 3-like 6 [Source:NCBI gene (formerly Entrezgene);Acc:825075] identity=32.6; qcov=1.12; evalue=3.5e-49; confidence=low
Rice	`Os12g0610200` (OsPIL11) - identity=36.7; qcov=0.865; evalue=3.32e-55; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00010 (HLH)
InterPro	-
eggNOG	-
NR	GeneID:131009457

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792768.1`
2	Chromosome	染色体	0.00000	`XP_057792768.1`
3	Centromere	着丝粒	0.00000	`XP_057792768.1`
4	Chromatin	染色质	0.00000	`XP_057792768.1`
5	Telomere	端粒	0.00000	`XP_057792768.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75157337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,B35
`Chr2:75157718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B37
`Chr2:75157736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr2:75157749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B101,C86
`Chr2:75157837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B139,B68,B85,C40
`Chr2:75157980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:75157991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B101,C86
`Chr2:75158319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:75158344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:75158598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,A22,B45,B48,C79
`Chr2:75158620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,C42,C55
`Chr2:75158637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B53,B66,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792768.1

431 aa

216

431

HLH

PF00010 HLH 252-298 aa

XP_057792769.1

431 aa

216

431

HLH

PF00010 HLH 252-298 aa

XP_057792770.1

431 aa

216

431

HLH

PF00010 HLH 252-298 aa

XP_057792771.1

431 aa

216

431

HLH

PF00010 HLH 252-298 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792768.1`	Pfam	`PF00010`	HLH	Domain	252	298	1.1e-13	51.4	Helix-loop-helix DNA-binding domain
`XP_057792769.1`	Pfam	`PF00010`	HLH	Domain	252	298	1.1e-13	51.4	Helix-loop-helix DNA-binding domain
`XP_057792770.1`	Pfam	`PF00010`	HLH	Domain	252	298	1.1e-13	51.4	Helix-loop-helix DNA-binding domain
`XP_057792771.1`	Pfam	`PF00010`	HLH	Domain	252	298	1.1e-13	51.4	Helix-loop-helix DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057936787.1
ATAATAATAATTAAAGGCTTCAGCTTTACAGCGAATTCTCTGCCGCAGCCAAAAATTTGGACAATTCCACGTGGCGAGTTGGGCGCTCGTTTCTTGATCACAGCAATGTCGGGAGCGGCGAGGTAGATCTCTCACACACAGCTGCAACCGGGCCCACGCTATCCAGCCTCACCAATCAGAACCGGACACGTGGGGCAGGGGGCTGATGCTGACGCATCCGTGTAACTTCACTCCACTGTGTGATCCCAGCAGCCCACTGT...

XM_057936785.1
TAATAATAATTAAAGGCTTCAGCTTTACAGCGAATTCTCTGCCGCAGCCAAAAATTTGGACAATTCCACGTGGCGAGTTGGGCGCTCGTTTCTTGATCACAGCAATGTCGGGAGCGGCGAGGTAGATCTCTCACACACAGCTGCAACCGGGCCCACGCTATCCAGCCTCACCAATCAGAACCGGACACGTGGGGCAGGGGGCTGATGCTGACGCATCCGTGTAACTTCACTCCACTGTGTGATCCCAGCAGCCCACTGTA...

CDS

4 records

下载 CDS FASTA

LOC131009457
ATGGATGCTTGCCTTCCTGATTGGAACACTGATGTTGGTGGTGAATTCCTTCTCCCACTTCAGAGAAAACCTCTTGGATTAGAGAATGAGTTGATTGAACTGTTGTGGCAAAATGGGGAGATTGTGTTGCATAGTCAAACCAATAGGAAACAAACAAAGCAAGTTAGGGATCCAAATCAATGTGGTTTGATTCAAGATGATGATGAAGCAGTTTCATGGATTGATTGCCCTATTGATGAATCCTTTGAGAGGGATTTCTG...

Protein

4 records

下载 Protein FASTA

XP_057792768.1
MDACLPDWNTDVGGEFLLPLQRKPLGLENELIELLWQNGEIVLHSQTNRKQTKQVRDPNQCGLIQDDDEAVSWIDCPIDESFERDFCANFLSEIPPPSLDESSKGETEFKSGAPEVIPQGFAPPPPPRFEAAEAVARHQPQMPGRSRECSGMTLGSSHCASNQVDLSWASSCGVGTMAAGAINEGVEREAPGQARESCSGGSGSSLWKTSRHKRKSRDMEESECPSDATESESAGGNKAKNGTARRSRVAEVHNMSERRR...

XP_057792769.1
MDACLPDWNTDVGGEFLLPLQRKPLGLENELIELLWQNGEIVLHSQTNRKQTKQVRDPNQCGLIQDDDEAVSWIDCPIDESFERDFCANFLSEIPPPSLDESSKGETEFKSGAPEVIPQGFAPPPPPRFEAAEAVARHQPQMPGRSRECSGMTLGSSHCASNQVDLSWASSCGVGTMAAGAINEGVEREAPGQARESCSGGSGSSLWKTSRHKRKSRDMEESECPSDATESESAGGNKAKNGTARRSRVAEVHNMSERRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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