当前解析结果
SmilChr03G000476| 统一新 Gene ID | SmilChr03G000476 |
|---|---|
| 名称 | SmilChr03G000476 |
| 描述 | probable disease resistance protein At1g59620 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5047238 - 5047891 / - |
| NCBI Gene ID | LOC131018177 |
|---|---|
| GeneID | 131018177 |
| locus_tag | - |
| NCBI Name | LOC131018177 |
| 原始查询 | SmilChr03G000476 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g59620 |
| 产物 | probable disease resistance protein At1g59620 |
| Arabidopsis | AT1G58400 (AT1G58400)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842209] identity=34.6; qcov=0.705; evalue=4.33e-08; confidence=low |
| Rice | Os07g0186500- identity=31; qcov=0.862; evalue=9.66e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018177 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802880.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802880.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802880.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802880.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802880.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5047276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B22,B23,C39 |
Chr3:5047286 |
TG |
T |
1bp_deletion | frameshift_variant | 73 | A13,A16,A19,A23,A4,A8,B10,B100,B103,B11,B112,B114,B124,B127,B128,B134,B137,B15,B16,B18,B19,B25,B29,B31,B37,B39,B48,B5,B55,B59,B63,B64,B65,B70,B73,B74,B77,B81,B83,B84,B95,B97,B98,C1,C14,C15,C16,C21,C24,C25,C3,C32,C35,C39,C41,C42,C43,C49,C51,C52,C55,C57,C60,C68,C79,C81,C83,C84,C87,C9,D1,D8,D9 |
Chr3:5047290 |
T |
TCA |
2bp_insertion | frameshift_variant | 38 | A13,A19,A4,A8,B10,B104,B11,B134,B137,B16,B32,B38,B48,B55,B59,B64,B65,B70,B73,B76,B81,B91,C1,C15,C24,C25,C43,C49,C52,C55,C57,C71,C79,C8,D1,D6,D8,D9 |
Chr3:5047346 |
C |
CCA |
2bp_insertion | frameshift_variant | 1 | B10 |
Chr3:5047346 |
C |
CCA |
2bp_insertion | CDS_variant | 1 | B10 |
Chr3:5047347 |
C |
T |
EMS_canonical_SNV | stop_gained | 150 | A1,A10,A11,A13,A2,A20,A21,A22,A23,A25,A3,A4,A5,A7,A9,B1,B101,B102,B104,B106,B108,B112,B117,B118,B12,B121,B123,B124,B126,B127,B128,B130,B133,B135,B138,B140,B17,B18,B19,B2,B20,B22,B23,B24,B26,B29,B30,B31,B32,B33,B34,B35,B37,B38,B39,B46,B48,B49,B5,B50,B51,B53,B54,B55,B57,B59,B6,B60,B61,B62,B63,B65,B66,B68,B69,B7,B70,B71,B72,B76,B77,B78,B79,B8,B80,B82,B85,B86,B88,B89,B9,B90,B92,B93,B94,B95,B97,B98,B99,C1,C10,C11,C14,C16,C18,C19,C2,C20,C21,C22,C23,C24,C29,C3,C31,C33,C34,C35,C36,C37,C39,C42,C43,C44,C45,C48,C5,C50,C51,C54,C58,C6,C60,C61,C63,C64,C65,C66,C67,C69,C7,C78,C8,C83,C85,C87,C9,D4,D7,D9 |
Chr3:5047349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,C4,C41,C60 |
Chr3:5047388 |
T |
TA |
1bp_insertion | frameshift_variant | 164 | A13,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A4,A8,B10,B100,B101,B102,B103,B104,B105,B107,B108,B109,B11,B112,B114,B117,B118,B119,B12,B122,B124,B125,B128,B13,B132,B134,B136,B137,B139,B14,B140,B15,B16,B18,B19,B2,B21,B22,B25,B26,B28,B29,B3,B31,B33,B37,B4,B41,B42,B43,B44,B46,B47,B48,B5,B52,B55,B56,B59,B61,B62,B63,B64,B65,B66,B67,B68,B70,B71,B73,B74,B75,B76,B77,B78,B80,B81,B82,B83,B84,B9,B95,B96,B97,B98,C1,C10,C12,C13,C14,C15,C16,C18,C23,C24,C25,C27,C28,C3,C32,C35,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C50,C51,C52,C53,C54,C55,C56,C57,C59,C60,C61,C62,C64,C65,C66,C68,C70,C72,C73,C74,C75,C77,C79,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D6,D7,D8,D9 |
Chr3:5047391 |
CG |
C |
1bp_deletion | frameshift_variant | 158 | A13,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A4,A8,B10,B100,B101,B102,B103,B104,B105,B108,B109,B11,B112,B114,B117,B118,B119,B12,B122,B125,B128,B13,B132,B134,B136,B137,B139,B14,B140,B15,B16,B18,B19,B2,B21,B22,B25,B26,B28,B29,B3,B31,B33,B37,B4,B41,B42,B43,B44,B46,B47,B48,B5,B52,B55,B56,B59,B61,B62,B63,B64,B65,B66,B68,B70,B71,B73,B74,B75,B76,B77,B78,B80,B81,B82,B83,B84,B9,B95,B96,B97,B98,C1,C10,C12,C13,C14,C15,C16,C23,C24,C25,C27,C28,C3,C32,C35,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C50,C51,C52,C53,C54,C55,C56,C57,C59,C60,C61,C62,C64,C65,C66,C68,C70,C72,C73,C74,C75,C79,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D7,D8,D9 |
Chr3:5047419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B104 |
Chr3:5047426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B93,C53,D10 |
Chr3:5047451 |
T |
TA |
1bp_insertion | frameshift_variant | 84 | A13,A16,A18,A19,A23,A4,A8,A9,B10,B100,B103,B104,B107,B11,B112,B113,B127,B128,B131,B134,B137,B16,B18,B19,B25,B29,B31,B37,B40,B48,B5,B55,B59,B6,B63,B64,B67,B70,B73,B74,B76,B77,B81,B82,B83,B84,B89,B95,B97,B98,C1,C15,C16,C18,C24,C25,C3,C32,C35,C39,C41,C42,C43,C46,C49,C51,C52,C54,C55,C57,C58,C60,C68,C79,C81,C83,C84,C87,C9,D1,D11,D6,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。