Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001287`

染色体: Chr03 坐标: 15065646-15069881 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001287`
名称	SmilChr03G001287
描述	UDP-glucose 4-epimerase GEPI48-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	15065646 - 15069881 / `-`

ID 对照

NCBI Gene ID	`LOC131017792`
GeneID	`131017792`
locus_tag	`-`
NCBI Name	`LOC131017792`
原始查询	`SmilChr03G001287`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glucose 4-epimerase GEPI48-like
产物	UDP-glucose 4-epimerase GEPI48-like
Arabidopsis	`AT4G10960` (UGE5) UDP-D-glucose/UDP-D-galactose 4-epimerase 5 [Source:NCBI gene (formerly Entrezgene);Acc:826696] identity=79.4; qcov=1; evalue=0; confidence=high
Rice	`Os05g0595100` (OsUGE1) - identity=79.7; qcov=0.986; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003978 (UDP-glucose 4-epimerase activity); GO:0005829 (cytosol); GO:0006012 (galactose metabolic process); GO:0006364 (rRNA processing)
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131017792

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057802501.1`
2	Cytoplasm	细胞质	0.80000	`XP_057802501.1`
3	Nucleus	细胞核	0.00000	`XP_057802501.1`
4	Chromosome	染色体	0.00000	`XP_057802501.1`
5	Centromere	着丝粒	0.00000	`XP_057802501.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:15066325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B40,C49
`Chr3:15067309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C21,C4,C64,C66
`Chr3:15067475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,A2,B133,B92,C21
`Chr3:15067482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A2,B133,C21
`Chr3:15069275`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C17
`Chr3:15069275`	`AC`	`A`	1bp_deletion	CDS_variant	1	C17
`Chr3:15069294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802501.1

345 aa

172

345

RmlD_sub_bind

adh_short

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF08659 KR 4-91 aa PF04321 RmlD_sub_bind 4-166 aa PF00106 adh_short 5-90 aa PF02719 Polysacc_synt_2 5-186 aa PF01370 Epimerase 5-267 aa PF01073 3Beta_HSD 6-139 aa PF16363 GDP_Man_Dehyd 6-329 aa PF13460 NAD_binding_10 9-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802501.1`	Pfam	`PF08659`	KR	Family	4	91	9.7e-06	26.3	KR domain
`XP_057802501.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	4	166	1.7e-11	44.4	RmlD substrate binding domain
`XP_057802501.1`	Pfam	`PF00106`	adh_short	Domain	5	90	3.8e-06	27.3	short chain dehydrogenase
`XP_057802501.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	5	186	8e-13	48.9	Polysaccharide biosynthesis protein
`XP_057802501.1`	Pfam	`PF01370`	Epimerase	Family	5	267	2.2e-58	198.2	NAD dependent epimerase/dehydratase family
`XP_057802501.1`	Pfam	`PF01073`	3Beta_HSD	Family	6	139	8.7e-16	58.5	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057802501.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	6	329	1.9e-69	235.4	GDP-mannose 4,6 dehydratase
`XP_057802501.1`	Pfam	`PF13460`	NAD_binding_10	Domain	9	177	3e-07	31.2	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946518.1
AAAAAATGAATAGAATCTTAGAGGATATGAAATGAGATAAACCGGCCATGAAAGCGGTGTATTCTCTTCACCACTTTCCCCAACTTTACAAAACGTCTCAATCAAACTCAAACATTTTTCTCACCAAAAAGAAATCCCTCAAATTTTCAAAATTAATTTTGAGGGATACTATAAAATTGCAGAGGTGAATTGAAGGAGAGATCCAAGAACTTTGTCGACAACAAGACAAGAATCTCTACATTTCACGTGACCCATCTCAG...

CDS

1 records

下载 CDS FASTA

LOC131017792
ATGTCTTCCAGTATTTTAGTCACCGGCGGCGCCGGCTACATTGGCAGCCACACAGTGCTGCAGCTGCTGCTCGGCGGCTACAAGGTGGTTGTGGTGGATAACTTGGACAATTCGTCGGAAATTGCGCTCAAGAGGGTTGAGGAACTCGCCGGGGAGCAGGGCTCCAATCTCACTTTTCATAAGATAGATCTTCGGGACAAGCCTGCGCTTGAGAAGCTTTTTGCTTCTCAAAAGTTTGATGCTGTTATTCACTTTGCTGG...

Protein

1 records

下载 Protein FASTA

XP_057802501.1
MSSSILVTGGAGYIGSHTVLQLLLGGYKVVVVDNLDNSSEIALKRVEELAGEQGSNLTFHKIDLRDKPALEKLFASQKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLLEVMAAHGCKRLVFSSSATVYGSPKTVPCTEEFPISALNPYGRTKLFIEEICRDLYQSDPTWKIILLRYFNPVGAHPSGYIGEDPRGTPNNLMPFVQQVAVGRRKKLTIYGTDYATKDGTGVRDYIHVVDLADGHIAALNKLSDPSVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器