当前解析结果
SmilChr03G001888| 统一新 Gene ID | SmilChr03G001888 |
|---|---|
| 名称 | SmilChr03G001888 |
| 描述 | serine/threonine-protein kinase UCN-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 26347528 - 26349009 / + |
| NCBI Gene ID | LOC131013950 |
|---|---|
| GeneID | 131013950 |
| locus_tag | - |
| NCBI Name | LOC131013950 |
| 原始查询 | SmilChr03G001888 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase UCN-like |
| 产物 | serine/threonine-protein kinase UCN-like |
| Arabidopsis | AT1G51170 (UCN)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841540] identity=58.4; qcov=1.07; evalue=4.81e-151; confidence=high |
| Rice | Os08g0504800- identity=48.4; qcov=1.1; evalue=1.25e-110; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013950 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797871.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057797871.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057797871.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797871.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797871.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:26347721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr3:26347762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,B59 |
Chr3:26347783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:26347784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:26347878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,C60,D10 |
Chr3:26347899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:26347909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:26348113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B98 |
Chr3:26348128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B78 |
Chr3:26348467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr3:26348548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C50 |
Chr3:26348731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797871.1PF07714
PK_Tyr_Ser-Thr 14-162 aa
PF00069
Pkinase 16-163 aa
PF00069
Pkinase 206-310 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797871.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 14 | 162 | 6.9e-23 | 82.0 | Protein tyrosine and serine/threonine kinase |
XP_057797871.1 |
Pfam | PF00069 |
Pkinase | Domain | 16 | 163 | 9.4e-54 | 183.3 | Protein kinase domain |
XP_057797871.1 |
Pfam | PF00069 |
Pkinase | Domain | 206 | 310 | 9.4e-54 | 183.3 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。