Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001996`

染色体: Chr03 坐标: 29548334-29575887 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001996`
名称	SmilChr03G001996
描述	uncharacterized SmilChr03G001996
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	29548334 - 29575887 / `-`

ID 对照

NCBI Gene ID	`LOC131014011`
GeneID	`131014011`
locus_tag	`-`
NCBI Name	`LOC131014011`
原始查询	`SmilChr03G001996`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Zinc finger, C3HC4 type (RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:832375]; symbol=AT5G23110; hit=AT5G23110; species=arabidopsis; confidence=high
产物	Zinc finger, C3HC4 type (RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:832375]; symbol=AT5G23110; hit=AT5G23110; species=arabidopsis; confidence=high
Arabidopsis	`AT5G23110` (AT5G23110) Zinc finger, C3HC4 type (RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:832375] identity=57.7; qcov=1; evalue=0; confidence=high
Rice	`Os04g0675101` - identity=56; qcov=0.494; evalue=0; confidence=medium
GO	GO:0030544 (Hsp70 protein binding)
KEGG	-
Pfam	PF13920 (zf-C3HC4_3); PF14447 (Prok-RING_4); PF25794 (SACS)
InterPro	-
eggNOG	-
NR	GeneID:131014011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797931.1`
2	Cytoplasm	细胞质	0.40000	`XP_057797931.1`
3	Nucleus membrane	核膜	0.20000	`XP_057797931.1`
4	Cytosol	细胞质基质	0.20000	`XP_057797931.1`
5	Chromosome	染色体	0.00000	`XP_057797931.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:29548712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B42,B90
`Chr3:29551030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:29551168`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B18,B2,B59,C60,C86
`Chr3:29552894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr3:29552896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,C74
`Chr3:29554054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B114,B25,B88
`Chr3:29554126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B133
`Chr3:29554194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B46,D3
`Chr3:29554464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B71,C54,C65
`Chr3:29554544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,C54
`Chr3:29554700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,A4,B105,B129,C34
`Chr3:29554907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797931.1

4769 aa

2384

4769

SACS

zf-C3HC4_3

Prok-RING_4

PF25794 SACS 34-273 aa PF25794 SACS 1403-1636 aa PF25794 SACS 2811-3034 aa PF13920 zf-C3HC4_3 4722-4762 aa PF14447 Prok-RING_4 4723-4765 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797931.1`	Pfam	`PF25794`	SACS	Domain	34	273	1.8e-191	634.6	Sacsin domain
`XP_057797931.1`	Pfam	`PF25794`	SACS	Domain	1403	1636	1.8e-191	634.6	Sacsin domain
`XP_057797931.1`	Pfam	`PF25794`	SACS	Domain	2811	3034	1.8e-191	634.6	Sacsin domain
`XP_057797931.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	4722	4762	5.7e-10	39.6	Zinc finger, C3HC4 type (RING finger)
`XP_057797931.1`	Pfam	`PF14447`	Prok-RING_4	Family	4723	4765	1.2e-06	29.0	Prokaryotic RING finger family 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941948.1
ACTCTTTTTTGCCTACTGCAAACTGTGACGTCGTCACTCCGCCTAGAAAAATTCCTTGGTCTCGTAGAAACTGTCCATTGTTTGCAACCAACTCGTTTTTTGTCAGCGGCTCCATGAAAATTCCAATCGGCGGTTGAATGATCGATCCACCCGAACAGACAGAGACACCTCGGGCCTCCCATCGCCGGCGGGAAATGGAACCGCAGCCGTTCCTTCTGGAAGACTTCGGGCAGAAGGTCGATTTGACCCGCAGGATCAGA...

CDS

1 records

下载 CDS FASTA

LOC131014011
ATGATCGATCCACCCGAACAGACAGAGACACCTCGGGCCTCCCATCGCCGGCGGGAAATGGAACCGCAGCCGTTCCTTCTGGAAGACTTCGGGCAGAAGGTCGATTTGACCCGCAGGATCAGAGAGGTTCTGCTCAACTACCCGGAGGGCACCACCGTCCTCAAGGAGCTCATTCAGAACGCTGATGACGCCGGCGCCACCACCGTCCGCCTCTGCCTGGACCGCCGCACCCACGGCGTCGACTCCCTACTCTCCCCCAC...

Protein

1 records

下载 Protein FASTA

XP_057797931.1
MIDPPEQTETPRASHRRREMEPQPFLLEDFGQKVDLTRRIREVLLNYPEGTTVLKELIQNADDAGATTVRLCLDRRTHGVDSLLSPTLAQWQGPALLAYNDAVFTNEDFVSISRIGGSTKHDKAWKTGRFGVGFNSVYHLTDLPSFVSGKHVVLFDPQGVYLPNVSAANPGKRIEYVSSSAISLYTDQFLPYCAFGCDMRSPFHGTLFRFPLRDADQGANSKLSKQAYPEEDVSSMFVQLYEEGTLLLLFLKCVLSIEMY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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