当前解析结果
SmilChr03G002230| 统一新 Gene ID | SmilChr03G002230 |
|---|---|
| 名称 | SmilChr03G002230 |
| 描述 | abscisic acid receptor PYL4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 35208085 - 35209102 / - |
| NCBI Gene ID | LOC131016453 |
|---|---|
| GeneID | 131016453 |
| locus_tag | - |
| NCBI Name | LOC131016453 |
| 原始查询 | SmilChr03G002230 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | abscisic acid receptor PYL4-like |
| 产物 | abscisic acid receptor PYL4-like |
| Arabidopsis | AT2G38310 (PYL4)PYR1-like 4 [Source:NCBI gene (formerly Entrezgene);Acc:818411] identity=77.8; qcov=0.763; evalue=7.43e-80; confidence=high |
| Rice | Os03g0297600 (OsPYL/RCAR4)- identity=67.1; qcov=0.807; evalue=7.87e-68; confidence=high |
| GO | GO:0004864 (protein phosphatase inhibitor activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009738 (abscisic acid-activated signaling pathway); GO:0010427 (abscisic acid binding); GO:0038023 (signaling receptor activity); GO:0080163 (GO:0080163) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00407 (Bet_v_1); PF10604 (Polyketide_cyc2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016453 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057801135.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057801135.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057801135.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057801135.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801135.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:35208281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C1 |
Chr3:35208356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:35208396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B81,C42,C6 |
Chr3:35208412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B53,B66,C77,D2 |
Chr3:35208434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr3:35208542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,B82 |
Chr3:35208566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,C64,C66 |
Chr3:35208858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr3:35208864 |
A |
AT |
1bp_insertion | frameshift_variant | 9 | A5,B1,B101,B135,B58,B7,B78,B8,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801135.1PF10604
Polyketide_cyc2 58-194 aa
PF00407
Bet_v_1 80-163 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801135.1 |
Pfam | PF10604 |
Polyketide_cyc2 | Family | 58 | 194 | 1.5e-18 | 68.1 | Polyketide cyclase / dehydrase and lipid transport |
XP_057801135.1 |
Pfam | PF00407 |
Bet_v_1 | Domain | 80 | 163 | 1.5e-06 | 28.9 | Pathogenesis-related protein Bet v 1 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。