Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003439`

染色体: Chr03 坐标: 52782533-52785521 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003439`
名称	SmilChr03G003439
描述	transcription factor bHLH122-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	52782533 - 52785521 / `-`

ID 对照

NCBI Gene ID	`LOC131014329`
GeneID	`131014329`
locus_tag	`-`
NCBI Name	`LOC131014329`
原始查询	`SmilChr03G003439`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor bHLH122-like
产物	transcription factor bHLH122-like
Arabidopsis	`AT1G51140` (FBH3) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841537] identity=39.4; qcov=1.1; evalue=3.01e-67; confidence=medium
Rice	`Os08g0506700` (OsFBH1) - identity=37.1; qcov=1.08; evalue=5.42e-54; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH)
InterPro	-
eggNOG	-
NR	GeneID:131014329

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798243.1`
2	Chromosome	染色体	0.00000	`XP_057798243.1`
3	Centromere	着丝粒	0.00000	`XP_057798243.1`
4	Chromatin	染色质	0.00000	`XP_057798243.1`
5	Telomere	端粒	0.00000	`XP_057798243.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:52783345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:52783506`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	C59
`Chr3:52783506`	`CTT`	`C`	2bp_deletion	CDS_variant	1	C59
`Chr3:52783509`	`C`	`CGT`	2bp_insertion	frameshift_variant	86	A1,A15,A22,A3,A4,A6,A7,A9,B10,B106,B115,B12,B123,B124,B130,B134,B136,B139,B14,B15,B16,B17,B19,B21,B23,B27,B29,B3,B32,B33,B39,B42,B43,B5,B52,B54,B60,B62,B64,B66,B68,B70,B71,B78,B82,B83,B87,B9,B92,B93,B94,B95,C1,C18,C2,C20,C21,C28,C30,C31,C32,C33,C38,C39,C41,C46,C47,C5,C52,C53,C55,C56,C6,C63,C65,C72,C75,C78,C8,C81,C82,C86,C87,D10,D3,D4
`Chr3:52783510`	`TAA`	`T`	2bp_deletion	frameshift_variant	88	A1,A15,A22,A3,A4,A5,A6,A7,A9,B10,B106,B115,B118,B12,B123,B124,B130,B134,B136,B139,B14,B15,B16,B17,B19,B21,B23,B27,B29,B3,B32,B33,B38,B39,B42,B43,B5,B52,B54,B60,B62,B64,B66,B68,B70,B71,B78,B82,B83,B87,B9,B92,B93,B94,B95,C1,C18,C2,C20,C21,C28,C31,C32,C38,C39,C40,C41,C46,C47,C5,C52,C53,C55,C56,C6,C63,C65,C72,C75,C78,C8,C81,C82,C86,C87,D10,D3,D4
`Chr3:52783738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:52784056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C76
`Chr3:52784450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B118
`Chr3:52784458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B26,B38,B39,C86
`Chr3:52784583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798243.1

357 aa

178

357

HLH

PF00010 HLH 292-337 aa

XP_057798245.1

356 aa

178

356

HLH

PF00010 HLH 292-337 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798243.1`	Pfam	`PF00010`	HLH	Domain	292	337	3.4e-09	37.1	Helix-loop-helix DNA-binding domain
`XP_057798245.1`	Pfam	`PF00010`	HLH	Domain	292	337	3.4e-09	37.1	Helix-loop-helix DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942262.1
GTTAACTTTCATTTATAAAAATTAGTTGAAGCTTTTAACTCTGATATTTTGTCATTAGAGACCTAAAAGTTGGATTCCAATGTTTAATTCAACTTTTGCACCGGCATTGATGGCAACCCTACATCATTAAAAATGACAGAAAAAATCAAAAGCTATATTTTTGTTGAATTGTTTTAGCCCAAAAAGTCGGAGATCCCTGGTGTCCACGAGTTCCCATTGGCCGCACCATTTTCAGCTCTCTCTCTCTACTCCAACTTATA...

XM_057942260.1
ATATTTTTGTTGAATTGTTTTAGCCCAAAAAGTCGGAGATCCCTGGTGTCCACGAGTTCCCATTGGCCGCACCATTTTCAGCTCTCTCTCTCTACTCCAACTTATAGTCTGCCAGTTTGCCAGCACCACCTTCTCCACTCTTCCACTTCCACTTTGAGCTCAAATCTTGGAGCACTTTTATGTTTGAGGATAAAAAGCTCTGTTTTAATAAGGATAAAAGTTATTGCACATCAAAGTTGCCGATGTGTGCGTCTCAGGAC...

CDS

2 records

下载 CDS FASTA

LOC131014329
ATGAATAGCCATGAGCAGCAATTCCAGCAAAATACGCAGATGGGGTCGGGGCTGACCCGATACAGGTCGGCCCCGAGCTCGTATTTGACTAGCCTTCTCAGCGCTCCAAGCAGCGATGGCGGATTCGGAGAGGAAGATTTCGCCGAGCTCTTCAACCCGCGAGCTTCGAGTCCTGAGACGCAAGTAATTTTCTCGAGGTTCATGAACAGCTCCGGACAAGAATCCCGTCCCTCAATTGCGCCTCTGCCGAGAAAGTCGGA...

Protein

2 records

下载 Protein FASTA

XP_057798243.1
MNSHEQQFQQNTQMGSGLTRYRSAPSSYLTSLLSAPSSDGGFGEEDFAELFNPRASSPETQVIFSRFMNSSGQESRPSIAPLPRKSENQEYAPPQKLQRQHSHDLYSEAAAVADTSYSKVFAPLSSNCAAPVQVKMERTSGLIRHSSSPAGLFANINIENEFKTMRGVGSYGGGNSANSEATFSSSANRFVAQMDYPSSSAMNMMNPISEGIGENAAVDDDDVDFITSLPWDDSPLLSDPYLNDQKNEAGNRPKPLLSHH...

XP_057798245.1
MNSHEQQFQQNTQMGSGLTRYRSAPSSYLTSLLSAPSSDGGFGEEDFAELFNPRASSPETQVIFSRFMNSSGQESRPSIAPLPRKSENQEYAPPQKLQRQHSHDLYSEAAAVADTSYSKVFAPLSSNCAAPVQVKMERTSGLIRHSSSPAGLFANINIENEFKTMRGVGSYGGGNSANSEATFSSSANRFVAQMDYPSSSAMNMMNPISEGIGENAAVDDDDVDFITSLPWDDSPLLSDPYLNDQKNEAGNRPKPLLSHH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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