当前解析结果
SmilChr03G003841| 统一新 Gene ID | SmilChr03G003841 |
|---|---|
| 名称 | SmilChr03G003841 |
| 描述 | hsp70 nucleotide exchange factor FES1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57543182 - 57545167 / + |
| NCBI Gene ID | LOC131014712 |
|---|---|
| GeneID | 131014712 |
| locus_tag | - |
| NCBI Name | LOC131014712 |
| 原始查询 | SmilChr03G003841 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hsp70 nucleotide exchange factor FES1-like |
| 产物 | hsp70 nucleotide exchange factor FES1-like |
| Arabidopsis | AT3G09350 (Fes1A)Fes1A [Source:NCBI gene (formerly Entrezgene);Acc:820091] identity=69; qcov=0.992; evalue=0; confidence=high |
| Rice | Os03g0822700 (OSJNBb0081B07.19)- identity=67.5; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08609 (Fes1); PF28415 (SIL1_FES1_HPBP1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057798760.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057798760.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057798760.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057798760.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798760.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57543327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr3:57543578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr3:57543609 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B28 |
Chr3:57543609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr3:57543947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr3:57543956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr3:57544030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B27,B41,C10,D9 |
Chr3:57544281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B102,B105 |
Chr3:57544314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr3:57544320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C69 |
Chr3:57544602 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C58 |
Chr3:57544602 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798760.1PF08609
Fes1 9-95 aa
PF28415
SIL1_FES1_HPBP1_C 91-216 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798760.1 |
Pfam | PF08609 |
Fes1 | Repeat | 9 | 95 | 3.6e-13 | 51.0 | Nucleotide exchange factor Fes1 |
XP_057798760.1 |
Pfam | PF28415 |
SIL1_FES1_HPBP1_C | Repeat | 91 | 216 | 1.1e-15 | 58.5 | SIL1/FES1/HPBP1 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。