当前解析结果
SmilChr04G000223| 统一新 Gene ID | SmilChr04G000223 |
|---|---|
| 名称 | SmilChr04G000223 |
| 描述 | very-long-chain aldehyde decarbonylase CER1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1980293 - 1983795 / - |
| NCBI Gene ID | LOC131022151 |
|---|---|
| GeneID | 131022151 |
| locus_tag | - |
| NCBI Name | LOC131022151 |
| 原始查询 | SmilChr04G000223 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | very-long-chain aldehyde decarbonylase CER1-like |
| 产物 | very-long-chain aldehyde decarbonylase CER1-like |
| Arabidopsis | AT1G02205 (CER1)Fatty acid hydroxylase superfamily [Source:NCBI gene (formerly Entrezgene);Acc:837602] identity=66; qcov=0.994; evalue=0; confidence=high |
| Rice | Os02g0621300 (OsCER1)- identity=59; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0005506 (iron ion binding); GO:0008610 (lipid biosynthetic process); GO:0016491 (oxidoreductase activity) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04116 (FA_hydroxylase); PF12076 (CER1-like_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022151 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057807550.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057807550.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807550.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807550.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807550.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1980528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B15,B18,B54 |
Chr4:1980561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B89,C87 |
Chr4:1980662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr4:1980804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:1980848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B48 |
Chr4:1981553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:1981751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B59 |
Chr4:1981844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr4:1981847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:1981976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr4:1981979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B5 |
Chr4:1982627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807550.1PF04116
FA_hydroxylase 134-272 aa
PF12076
CER1-like_C 451-614 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807550.1 |
Pfam | PF04116 |
FA_hydroxylase | Domain | 134 | 272 | 1.4e-20 | 74.8 | Fatty acid hydroxylase |
XP_057807550.1 |
Pfam | PF12076 |
CER1-like_C | Domain | 451 | 614 | 1.2e-73 | 247.0 | CER1-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。