当前解析结果
SmilChr04G000271| 统一新 Gene ID | SmilChr04G000271 |
|---|---|
| 名称 | SmilChr04G000271 |
| 描述 | AAA-ATPase At4g30250-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2511261 - 2513123 / + |
| NCBI Gene ID | LOC131022191 |
|---|---|
| GeneID | 131022191 |
| locus_tag | - |
| NCBI Name | LOC131022191 |
| 原始查询 | SmilChr04G000271 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-ATPase At4g30250-like |
| 产物 | AAA-ATPase At4g30250-like |
| Arabidopsis | AT4G25835 (AT4G25835)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828689] identity=44.6; qcov=0.926; evalue=6.79e-130; confidence=medium |
| Rice | Os09g0445700- identity=53.5; qcov=1.05; evalue=2.08e-176; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF14363 (AAA_assoc); PF25568 (AAA_lid_At3g28540) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022191 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057807611.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057807611.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057807611.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057807611.1 |
| 5 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057807611.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2511511 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | C51 |
Chr4:2511511 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | C51 |
Chr4:2511741 |
CG |
C |
1bp_deletion | frameshift_variant | 13 | A3,A6,B117,B13,B35,B52,B64,C1,C11,C49,C69,C84,C9 |
Chr4:2511744 |
CCT |
C |
2bp_deletion | frameshift_variant | 13 | A3,A6,B117,B13,B35,B52,B64,C1,C11,C49,C69,C84,C9 |
Chr4:2511799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr4:2511872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:2511976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B90 |
Chr4:2511998 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B113 |
Chr4:2511998 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B113 |
Chr4:2512001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr4:2512004 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B113 |
Chr4:2512004 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B113 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807611.1PF14363
AAA_assoc 27-124 aa
PF00004
AAA 236-373 aa
PF25568
AAA_lid_At3g28540 376-439 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807611.1 |
Pfam | PF14363 |
AAA_assoc | Family | 27 | 124 | 9.5e-16 | 58.7 | Domain associated at C-terminal with AAA |
XP_057807611.1 |
Pfam | PF00004 |
AAA | Domain | 236 | 373 | 9.6e-17 | 62.4 | ATPase family associated with various cellular activities (AAA) |
XP_057807611.1 |
Pfam | PF25568 |
AAA_lid_At3g28540 | Domain | 376 | 439 | 1.4e-12 | 48.1 | At3g28540-like, AAA+ ATPase lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。