当前解析结果
SmilChr04G000279| 统一新 Gene ID | SmilChr04G000279 |
|---|---|
| 名称 | SmilChr04G000279 |
| 描述 | GTP 3',8-cyclase, mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2549172 - 2554008 / - |
| NCBI Gene ID | LOC131022197 |
|---|---|
| GeneID | 131022197 |
| locus_tag | - |
| NCBI Name | LOC131022197 |
| 原始查询 | SmilChr04G000279 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GTP 3',8-cyclase, mitochondrial |
| 产物 | GTP 3'%2C8-cyclase%2C mitochondrial |
| Arabidopsis | AT2G31955 (CNX2)cofactor of nitrate reductase and xanthine dehydrogenase 2 [Source:NCBI gene (formerly Entrezgene);Acc:817754] identity=74.6; qcov=1; evalue=0; confidence=high |
| Rice | Os12g0507000- identity=75.6; qcov=0.916; evalue=0; confidence=high |
| GO | GO:0006777 (Mo-molybdopterin cofactor biosynthetic process); GO:0019008 (GO:0019008); GO:0046872 (metal ion binding); GO:0051539 (4 iron, 4 sulfur cluster binding); GO:0061798 (GTP 3',8'-cyclase activity); GO:0061799 (cyclic pyranopterin monophosphate synthase activity) |
| KEGG | smil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil04122 (Sulfur relay system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04055 (Radical_SAM); PF06463 (Mob_synth_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022197 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057807617.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.60000 | XP_057807617.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807617.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807617.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807617.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2551281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B49,B79 |
Chr4:2551290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,C67 |
Chr4:2551422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B49,B79 |
Chr4:2551441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr4:2551619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B82 |
Chr4:2551647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B131 |
Chr4:2551691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,C71 |
Chr4:2552155 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B140 |
Chr4:2552406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C18 |
Chr4:2552426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,C71 |
Chr4:2553641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807617.1PF04055
Radical_SAM 82-243 aa
PF06463
Mob_synth_C 249-375 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807617.1 |
Pfam | PF04055 |
Radical_SAM | Domain | 82 | 243 | 1.6e-34 | 120.2 | Radical SAM superfamily |
XP_057807617.1 |
Pfam | PF06463 |
Mob_synth_C | Domain | 249 | 375 | 2.1e-37 | 128.7 | Molybdenum Cofactor Synthesis C |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。