Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000431`

染色体: Chr04 坐标: 4589235-4596068 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000431`
名称	SmilChr04G000431
描述	polyamine oxidase 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4589235 - 4596068 / `+`

ID 对照

NCBI Gene ID	`LOC131022318`
GeneID	`131022318`
locus_tag	`-`
NCBI Name	`LOC131022318`
原始查询	`SmilChr04G000431`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyamine oxidase 1
产物	polyamine oxidase 1
Arabidopsis	`AT5G13700` (PAO1) polyamine oxidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831215] identity=74.4; qcov=0.893; evalue=0; confidence=high
Rice	`Os09g0368200` (PAOb) - identity=47.3; qcov=0.925; evalue=1.76e-147; confidence=high
GO	GO:0006598 (polyamine catabolic process); GO:0046592 (polyamine oxidase activity)
KEGG	smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01593 (Amino_oxidase); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:131022318

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.40000	`XP_057807748.1`
2	Cytoplasm	细胞质	0.20000	`XP_057807748.1`
3	Secreted	分泌到胞外	0.20000	`XP_057807748.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057807748.1`
5	Nucleus	细胞核	0.00000	`XP_057807748.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4589698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,D7
`Chr4:4589708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:4589740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B7,B96
`Chr4:4592087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:4592096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:4592120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:4592135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:4592136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr4:4592137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr4:4595515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807748.1

495 aa

248

495

NAD_binding_8

Amino_oxidase

PF13450 NAD_binding_8 11-79 aa PF01593 Amino_oxidase 16-434 aa

XP_057807749.1

494 aa

247

494

NAD_binding_8

Amino_oxidase

PF13450 NAD_binding_8 11-79 aa PF01593 Amino_oxidase 16-433 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807748.1`	Pfam	`PF13450`	NAD_binding_8	Domain	11	79	1.7e-14	54.5	NAD(P)-binding Rossmann-like domain
`XP_057807748.1`	Pfam	`PF01593`	Amino_oxidase	Domain	16	434	2e-70	239.0	Flavin containing amine oxidoreductase
`XP_057807749.1`	Pfam	`PF13450`	NAD_binding_8	Domain	11	79	1.7e-14	54.5	NAD(P)-binding Rossmann-like domain
`XP_057807749.1`	Pfam	`PF01593`	Amino_oxidase	Domain	16	433	2.1e-70	239.0	Flavin containing amine oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951765.1
CCCGCTATTTCTGCCTCACTCGCAACTCACAACTCCTACAAACTAATCAATTCACTTTCTCTGTTTTTTCGTTTTTAATCAATTGCTGAATCTTCTTTCCCTCAATTTCAATGGAGAATCCGACTCGATGCTCCGTGATCATAGTCGGAGCTGGCATCTCAGGTATAACGTCGGCGAAGGTGCTGGCCGAGAATGGCGTGGACGACGTGCTCATACTGGAGGCGGCGGACAGGATAGGGGGCCGGATTAGGAAGGAGGAG...

XM_057951766.1
CCCGCTATTTCTGCCTCACTCGCAACTCACAACTCCTACAAACTAATCAATTCACTTTCTCTGTTTTTTCGTTTTTAATCAATTGCTGAATCTTCTTTCCCTCAATTTCAATGGAGAATCCGACTCGATGCTCCGTGATCATAGTCGGAGCTGGCATCTCAGGTATAACGTCGGCGAAGGTGCTGGCCGAGAATGGCGTGGACGACGTGCTCATACTGGAGGCGGCGGACAGGATAGGGGGCCGGATTAGGAAGGAGGAG...

CDS

2 records

下载 CDS FASTA

LOC131022318
ATGGAGAATCCGACTCGATGCTCCGTGATCATAGTCGGAGCTGGCATCTCAGGTATAACGTCGGCGAAGGTGCTGGCCGAGAATGGCGTGGACGACGTGCTCATACTGGAGGCGGCGGACAGGATAGGGGGCCGGATTAGGAAGGAGGAGTTCGGCGGCGTCACGGTGGAGCTCGGGGCCGGCTGGATCGCCGGCGTCGGCGGGAAACAGTCCAACCCCGTCTGGGAGCTCGCCCGACACTCCGATCTCCGCACCTGCCT...

Protein

2 records

下载 Protein FASTA

XP_057807748.1
MENPTRCSVIIVGAGISGITSAKVLAENGVDDVLILEAADRIGGRIRKEEFGGVTVELGAGWIAGVGGKQSNPVWELARHSDLRTCLSDYSNARYNIYDHSGKIFPSGIAAHSYQKAVESAIQKLRKQESNPDVDASLLAETTSAPKTPIELAIDFILHDFEMAEVEPISTYVEFGEREFLVADERGYEHLLYKMAETFLFTSEDGEISDSRLKLNKVVRELQHSRNGVSVKTEDGCVFEANYVILSVSIGVLQSHLISF...

XP_057807749.1
MENPTRCSVIIVGAGISGITSAKVLAENGVDDVLILEAADRIGGRIRKEEFGGVTVELGAGWIAGVGGKQSNPVWELARHSDLRTCLSDYSNARYNIYDHSGKIFPSGIAAHSYQKAVESAIQKLRKQESNPDVDASLLAETTAPKTPIELAIDFILHDFEMAEVEPISTYVEFGEREFLVADERGYEHLLYKMAETFLFTSEDGEISDSRLKLNKVVRELQHSRNGVSVKTEDGCVFEANYVILSVSIGVLQSHLISFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器