Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001861`

染色体: Chr04 坐标: 30295575-30300109 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001861`
名称	SmilChr04G001861
描述	tryptophan aminotransferase-related protein 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	30295575 - 30300109 / `-`

ID 对照

NCBI Gene ID	`LOC131019720`
GeneID	`131019720`
locus_tag	`-`
NCBI Name	`LOC131019720`
原始查询	`SmilChr04G001861`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tryptophan aminotransferase-related protein 2-like
产物	tryptophan aminotransferase-related protein 2-like
Arabidopsis	`AT4G24670` (TAR2) tryptophan aminotransferase related 2 [Source:NCBI gene (formerly Entrezgene);Acc:828569] identity=64.3; qcov=0.841; evalue=1.59e-174; confidence=high
Rice	`Os05g0169300` (TAR1) - identity=54.4; qcov=0.898; evalue=2.21e-151; confidence=high
GO	GO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0016846 (carbon-sulfur lyase activity)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2); PF04864 (Alliinase_C)
InterPro	-
eggNOG	-
NR	GeneID:131019720

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057804294.1`
2	Nucleus	细胞核	0.00000	`XP_057804294.1`
3	Chromosome	染色体	0.00000	`XP_057804294.1`
4	Centromere	着丝粒	0.00000	`XP_057804294.1`
5	Chromatin	染色质	0.00000	`XP_057804294.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:30295698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B135,B48,C37
`Chr4:30296168`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr4:30296470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D11,D7
`Chr4:30296488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr4:30296506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:30296605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804294.1

440 aa

220

440

Alliinase_C

Aminotran_1_2

PF04864 Alliinase_C 73-432 aa PF00155 Aminotran_1_2 118-428 aa

XP_057804295.1

440 aa

220

440

Alliinase_C

Aminotran_1_2

PF04864 Alliinase_C 73-432 aa PF00155 Aminotran_1_2 118-428 aa

XP_057804296.1

440 aa

220

440

Alliinase_C

Aminotran_1_2

PF04864 Alliinase_C 73-432 aa PF00155 Aminotran_1_2 118-428 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804294.1`	Pfam	`PF04864`	Alliinase_C	Domain	73	432	1.1e-146	489.1	Allinase
`XP_057804294.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	118	428	1.5e-11	44.8	Aminotransferase class I and II
`XP_057804295.1`	Pfam	`PF04864`	Alliinase_C	Domain	73	432	1.1e-146	489.1	Allinase
`XP_057804295.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	118	428	1.5e-11	44.8	Aminotransferase class I and II
`XP_057804296.1`	Pfam	`PF04864`	Alliinase_C	Domain	73	432	1.1e-146	489.1	Allinase
`XP_057804296.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	118	428	1.5e-11	44.8	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057948312.1
AGAAAAAGAAAAGGCAAATAATTTATTAACAAAAGAAACACAAAGGCAAACTGTAAGTGCAAAGAACACAGCGAATTTTGCAGATATCTTTCCCTTTTGCCATCCCTAAACCAGCGAAGCCACTCCCTTTCACCTTCCGAACCGCATGAACAAGTACCAACTATGTGAGAGAGAAAGAAAGGGGCGGTGAATCTACCTCTTATATTTAAATATTTTGTTGGGGCACTTTAAAACATTTTTTTTTTTTAGTATTTTTCTCT...

XM_057948311.1
AGAAAAAGAAAAGGCAAATAATTTATTAACAAAAGAAACACAAAGGCAAACTGTAAGTGCAAAGAACACAGCGAATTTTGCAGATATCTTTCCCTTTTGCCATCCCTAAACCAGCGAAGCCACTCCCTTTCACCTTCCGAACCGCATGAACAAGTACCAACTATGTGAGAGAGAAAGAAAGGGGCGGTGAATCTACCTCTTATATTTAAATATTTTGTTGGGGCACTTTAAAACATTTTTTTTTTTTAGTATTTTTCTCT...

CDS

3 records

下载 CDS FASTA

LOC131019720
ATGGTTATGGAGTTTAAAACGATGGTTTTGGGACATTTTTTGGTGATTTCTTTGGCCTTGAACGTGGGATTGTTGTATAGAAACTACTGCAGCGGTAAACATAAATCCCAAAACGTCTTCAGCTTCAACAATGAGTGCAAGAATTCATCTTTGCTCCCTCAAAAGGCGTTTCTTGAAACTAAATTTCAATCTTCAAAAGCAGCTCTCAGCGAAGTAATCGATCTCGATCATGGTGATCCGACGATGTACGAGAGGTATTG...

Protein

3 records

下载 Protein FASTA

XP_057804294.1
MVMEFKTMVLGHFLVISLALNVGLLYRNYCSGKHKSQNVFSFNNECKNSSLLPQKAFLETKFQSSKAALSEVIDLDHGDPTMYERYWQQMGDRTTVVIPGWKFISYFSDVRSLCWFLEPEFANAVVRLHKLVGNAVTDDRYIVVGTGSTQLFQAVLYAVSPPNASEPISVVSAAPFYSSYPLITEFLKSGLYKWGGDAHKFKRDIPYIELVTSPNNPDGLSREAVVNRNQGILVHDLAYYWPQYTSISSPPADHDIMLFT...

XP_057804295.1
MVMEFKTMVLGHFLVISLALNVGLLYRNYCSGKHKSQNVFSFNNECKNSSLLPQKAFLETKFQSSKAALSEVIDLDHGDPTMYERYWQQMGDRTTVVIPGWKFISYFSDVRSLCWFLEPEFANAVVRLHKLVGNAVTDDRYIVVGTGSTQLFQAVLYAVSPPNASEPISVVSAAPFYSSYPLITEFLKSGLYKWGGDAHKFKRDIPYIELVTSPNNPDGLSREAVVNRNQGILVHDLAYYWPQYTSISSPPADHDIMLFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器