Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003117`

染色体: Chr04 坐标: 47728105-47731383 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003117`
名称	SmilChr04G003117
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47728105 - 47731383 / `+`

ID 对照

NCBI Gene ID	`LOC131023912`
GeneID	`131023912`
locus_tag	`-`
NCBI Name	`LOC131023912`
原始查询	`SmilChr04G003117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
产物	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Arabidopsis	`AT5G66730` (IDD1) C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:836806] identity=57.2; qcov=1.04; evalue=3.06e-172; confidence=high
Rice	`Os01g0242200` (OsIDD8) - identity=89; qcov=0.324; evalue=1.68e-111; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131023912

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809539.1`
2	Chromosome	染色体	0.00000	`XP_057809539.1`
3	Centromere	着丝粒	0.00000	`XP_057809539.1`
4	Chromatin	染色质	0.00000	`XP_057809539.1`
5	Telomere	端粒	0.00000	`XP_057809539.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47729248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B114,B20,B59,B86
`Chr4:47729265`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B56
`Chr4:47729265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr4:47729467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,B86
`Chr4:47729525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:47730114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B35,B88
`Chr4:47730161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B50,B6,B93,C63
`Chr4:47730203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr4:47730212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B65,B76,B98,C16
`Chr4:47730235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr4:47730420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B114,B20,B59,B86
`Chr4:47730443`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809539.1

503 aa

252

503

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF00096 zf-C2H2 53-75 aa PF22996 C2H2-2nd_BIRD-IDD 90-124 aa PF22995 C2CH-3rd_BIRD-IDD 128-152 aa PF22992 C2CH-4th_BIRD-IDD 155-193 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809539.1`	Pfam	`PF00096`	zf-C2H2	Domain	53	75	5.1e-07	30.5	Zinc finger, C2H2 type
`XP_057809539.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	90	124	6.6e-22	78.0	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057809539.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	128	152	2.2e-14	53.5	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057809539.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	155	193	3.1e-23	82.1	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953556.1
GATTACATTTATAAATTTCAGAAATAATGAAGCATCACATGGTACCGACGAAATTCCTAAATGCAAGTAATAACTTTGGTGAAGACCCCAAAAAAGCAGAGAAGGAAGACTTTCGCCCACTGACTCACTCTGCCGCTCTCTCTCTCTCTCTCAACCGCCGACTCAAAAAAGACACCGTCCAACTCGCCGGTAGCTCTGAACCGCTGAGTTTATCAGAAAACGCTCTACAAATCAAACTGTTTGTACAACCTTCCCCCATC...

CDS

1 records

下载 CDS FASTA

LOC131023912
ATGAATGACTCCACAGCGTCCGGTGATGATTCTTCAGGTAATCAAGCTGCCACGCCAAAAGCGATACCGAAAAAGAAGCGGAATCTGCCCGGCATGCCCGATCCTGATGCTGAGGTGATCGCTTTATCGCCGAAGACGTTAATGGCAACAAACAGATTTGTTTGTGAAATATGCAAAAAGGGATTTCAGCGGGACCAGAATCTGCAGCTGCATCGAAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGATCGAGCAA...

Protein

1 records

下载 Protein FASTA

XP_057809539.1
MNDSTASGDDSSGNQAATPKAIPKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSSKDVKKRVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFNRKDSFITHRAFCDALAEETSKPQPATAPPSADDGPRIAAVVSPPSPPTSASSPLPLAPLPSEAPTPEDSSATDVVSLVLPDNNPVTEMLESTKPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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