当前解析结果
SmilChr04G003236| 统一新 Gene ID | SmilChr04G003236 |
|---|---|
| 名称 | SmilChr04G003236 |
| 描述 | purple acid phosphatase 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 49168715 - 49170370 / - |
| NCBI Gene ID | LOC131020137 |
|---|---|
| GeneID | 131020137 |
| locus_tag | - |
| NCBI Name | LOC131020137 |
| 原始查询 | SmilChr04G003236 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | purple acid phosphatase 3-like |
| 产物 | purple acid phosphatase 3-like |
| Arabidopsis | AT1G14700 (PAP3)purple acid phosphatase 3 [Source:NCBI gene (formerly Entrezgene);Acc:838035] identity=54.5; qcov=0.889; evalue=5.89e-122; confidence=high |
| Rice | Os11g0549620 (OsPAP7)- identity=52.5; qcov=0.907; evalue=1.84e-115; confidence=high |
| GO | GO:0003993 (acid phosphatase activity); GO:0008198 (ferrous iron binding); GO:0008199 (ferric iron binding) |
| KEGG | smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00149 (Metallophos) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020137 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057804806.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057804806.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804806.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804806.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804806.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:49168763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B81,C21,C6 |
Chr4:49168776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B63,C53 |
Chr4:49169009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B101,B2,B35,B99 |
Chr4:49169656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,B64 |
Chr4:49169683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B63,C53 |
Chr4:49169861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr4:49169882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B63,C12,C53 |
Chr4:49170118 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C57 |
Chr4:49170118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:49170148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:49170181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B81,C21,C6 |
Chr4:49170213 |
A |
AT |
1bp_insertion | frameshift_variant | 21 | B117,B122,B126,B129,B131,B20,B41,B55,B64,B67,B78,B85,B90,C13,C32,C4,C55,C67,C68,C71,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804806.1PF00149
Metallophos 53-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804806.1 |
Pfam | PF00149 |
Metallophos | Domain | 53 | 260 | 3.3e-18 | 67.6 | Calcineurin-like phosphoesterase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。