Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004045`

染色体: Chr04 坐标: 55671769-55674743 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004045`
名称	SmilChr04G004045
描述	uroporphyrinogen decarboxylase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55671769 - 55674743 / `+`

ID 对照

NCBI Gene ID	`LOC131020916`
GeneID	`131020916`
locus_tag	`-`
NCBI Name	`LOC131020916`
原始查询	`SmilChr04G004045`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uroporphyrinogen decarboxylase, chloroplastic
产物	uroporphyrinogen decarboxylase%2C chloroplastic
Arabidopsis	`AT2G40490` (HEME2) Uroporphyrinogen decarboxylase [Source:NCBI gene (formerly Entrezgene);Acc:818644] identity=81.3; qcov=0.932; evalue=0; confidence=high
Rice	`Os03g0337600` (UroD) - identity=83.3; qcov=0.917; evalue=0; confidence=high
GO	GO:0004853 (uroporphyrinogen decarboxylase activity); GO:0006779 (porphyrin-containing compound biosynthetic process)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01208 (URO-D)
InterPro	-
eggNOG	-
NR	GeneID:131020916

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057805947.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057805947.1`
3	Nucleus	细胞核	0.00000	`XP_057805947.1`
4	Chromosome	染色体	0.00000	`XP_057805947.1`
5	Centromere	着丝粒	0.00000	`XP_057805947.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55672603`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:55673530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,D9
`Chr4:55673620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B79,B82,C48
`Chr4:55673870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:55674135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,C83
`Chr4:55674233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,C79
`Chr4:55674383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,D11
`Chr4:55674548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B132,B133,B140,B8,C7
`Chr4:55674555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805947.1

387 aa

194

387

URO-D

PF01208 URO-D 47-383 aa

XP_057805948.1

385 aa

192

385

URO-D

PF01208 URO-D 45-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805947.1`	Pfam	`PF01208`	URO-D	Domain	47	383	3.5e-123	411.7	Uroporphyrinogen decarboxylase (URO-D)
`XP_057805948.1`	Pfam	`PF01208`	URO-D	Domain	45	381	3.5e-123	411.8	Uroporphyrinogen decarboxylase (URO-D)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949964.1
GAAGGAGATGGACCCACTGCACGTCGTTGATTGAAACGCGATTAGATTTCCAGATTTCGTGCCCTTATCTTTTCTTCTATCTCCAATCCATTCTCATGTCTCCGTTAAACCCTCTTCTTTGTTAGAACTCTTTTCTTTTTCTTTTTTCAGCTCACTTCTTTCCATTTCCATTTTTTGGAGGGATCTTCCAAGAAAAGATGGCTTGCATTTATAGCAGCTCGGTTTCATCGATTTCCACTAAATTGAATTTCCCCTCTCTT...

XM_057949965.1
CACGTCGTTGATTGAAACGCGATTAGATTTCCAGATTTCGTGCCCTTATCTTTTCTTCTATCTCCAATCCATTCTCATGTCTCCGTTAAACCCTCTTCTTTGTTAGAACTCTTTTCTTTTTCTTTTTTCAGCTCACTTCTTTCCATTTCCATTTTTTGGAGGGATCTTCCAAGAAAAGATGGCTTGCATTTATAGCAGCTCGGTTTCATCGATTTCCACTAAATTGAATTTCCCCTCTCTTTCTAATCACAAACCCAAGT...

CDS

2 records

下载 CDS FASTA

LOC131020916
ATGGCTTGCATTTATAGCAGCTCGGTTTCATCGATTTCCACTAAATTGAATTTCCCCTCTCTTTCTAATCACAAACCCAAGTTCGTTTGCTCTCTTGGAGGCGCTGTTGCGGAGCCAAAAGCTGTGAATGCCACCGAGCCTTTGTTGCTCAACGCTGCACGGGGAAAGGAAGTCGATAGGCCACCTGTTTGGCTTATGAGACAAGCAGGGAGGTACATGAAGAGTTACCAACTCCTCTGCGAGAAGCATCCGTCTTTCCG...

LOC131020916
ATGGCTTGCATTTATAGCAGCTCGGTTTCATCGATTTCCACTAAATTGAATTTCCCCTCTCTTTCTAATCACAAACCCAAGTTCGTTTGCTCTCTTGGAGTTGCGGAGCCAAAAGCTGTGAATGCCACCGAGCCTTTGTTGCTCAACGCTGCACGGGGAAAGGAAGTCGATAGGCCACCTGTTTGGCTTATGAGACAAGCAGGGAGGTACATGAAGAGTTACCAACTCCTCTGCGAGAAGCATCCGTCTTTCCGTGAGAG...

Protein

2 records

下载 Protein FASTA

XP_057805947.1
MACIYSSSVSSISTKLNFPSLSNHKPKFVCSLGGAVAEPKAVNATEPLLLNAARGKEVDRPPVWLMRQAGRYMKSYQLLCEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLTGMNIPFDIVKGKGPIIFDPIRTAADVEKVIEFTPDESVPYVGEALTILRKEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKVLHALLEKFAASMAKYVQYQADKGAQAVQIFDSWATELSPVDFE...

XP_057805948.1
MACIYSSSVSSISTKLNFPSLSNHKPKFVCSLGVAEPKAVNATEPLLLNAARGKEVDRPPVWLMRQAGRYMKSYQLLCEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLTGMNIPFDIVKGKGPIIFDPIRTAADVEKVIEFTPDESVPYVGEALTILRKEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKVLHALLEKFAASMAKYVQYQADKGAQAVQIFDSWATELSPVDFEEF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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