当前解析结果
SmilChr04G004068| 统一新 Gene ID | SmilChr04G004068 |
|---|---|
| 名称 | SmilChr04G004068 |
| 描述 | mitogen-activated protein kinase 15-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55789065 - 55793398 / + |
| NCBI Gene ID | LOC131020939 |
|---|---|
| GeneID | 131020939 |
| locus_tag | - |
| NCBI Name | LOC131020939 |
| 原始查询 | SmilChr04G004068 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitogen-activated protein kinase 15-like |
| 产物 | mitogen-activated protein kinase 15-like |
| Arabidopsis | AT5G19010 (MPK16)mitogen-activated protein kinase 16 [Source:NCBI gene (formerly Entrezgene);Acc:832019] identity=73.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os05g0143500 (OsMPK14)- identity=72.1; qcov=0.981; evalue=0; confidence=high |
| GO | GO:0004707 (MAP kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020939 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805973.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057805973.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805973.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805973.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805973.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55790539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:55790575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr4:55790806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C50 |
Chr4:55790827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B50,C38,C63,C71,C84 |
Chr4:55790905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C60,D10 |
Chr4:55791246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B69,B82,B91,C17 |
Chr4:55791392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B69 |
Chr4:55791412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:55791438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B69 |
Chr4:55791510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B33,C76,D8 |
Chr4:55791516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:55791623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B84,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805973.1PF00069
Pkinase 24-315 aa
PF07714
PK_Tyr_Ser-Thr 26-239 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805973.1 |
Pfam | PF00069 |
Pkinase | Domain | 24 | 315 | 2.3e-65 | 221.3 | Protein kinase domain |
XP_057805973.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 26 | 239 | 7.3e-33 | 114.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。