当前解析结果
SmilChr04G004099| 统一新 Gene ID | SmilChr04G004099 |
|---|---|
| 名称 | SmilChr04G004099 |
| 描述 | UDP-glucosyltransferase 29-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55964524 - 55966188 / + |
| NCBI Gene ID | LOC131020975 |
|---|---|
| GeneID | 131020975 |
| locus_tag | - |
| NCBI Name | LOC131020975 |
| 原始查询 | SmilChr04G004099 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucosyltransferase 29-like |
| 产物 | UDP-glucosyltransferase 29-like |
| Arabidopsis | AT5G49690 (AT5G49690)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835032] identity=31.1; qcov=0.998; evalue=1.53e-70; confidence=low |
| Rice | Os07g0672700- identity=40.4; qcov=1.06; evalue=1.82e-111; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF06722 (EryCIII-like_C); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020975 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057806016.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057806016.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806016.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806016.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806016.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55964678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B137,B89,B98,C60 |
Chr4:55964715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B19,D9 |
Chr4:55965026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:55965062 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B9 |
Chr4:55965062 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B9 |
Chr4:55965110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:55965119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:55965322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr4:55965492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:55965658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B9,D10 |
Chr4:55965749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr4:55965765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806016.1PF26168
Glyco_transf_N 10-248 aa
PF00201
UDPGT 259-424 aa
PF06722
EryCIII-like_C 336-440 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806016.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 10 | 248 | 7.6e-09 | 36.5 | Glycosyltransferase, N-terminal domain |
XP_057806016.1 |
Pfam | PF00201 |
UDPGT | Family | 259 | 424 | 6.2e-23 | 82.1 | UDP-glucoronosyl and UDP-glucosyl transferase |
XP_057806016.1 |
Pfam | PF06722 |
EryCIII-like_C | Domain | 336 | 440 | 2e-08 | 35.0 | Erythromycin biosynthesis protein CIII-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。