当前解析结果
SmilChr05G000456| 统一新 Gene ID | SmilChr05G000456 |
|---|---|
| 名称 | SmilChr05G000456 |
| 描述 | probable inositol transporter 2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3446045 - 3448320 / + |
| NCBI Gene ID | LOC130985175 |
|---|---|
| GeneID | 130985175 |
| locus_tag | - |
| NCBI Name | LOC130985175 |
| 原始查询 | SmilChr05G000456 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inositol transporter 2 |
| 产物 | probable inositol transporter 2 |
| Arabidopsis | AT1G30220 (INT2)inositol transporter 2 [Source:NCBI gene (formerly Entrezgene);Acc:839902] identity=76.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os07g0151200- identity=72.9; qcov=1; evalue=0; confidence=high |
| GO | GO:0005366 (myo-inositol:proton symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF06609 (TRI12); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985175 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057763980.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057763980.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057763980.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057763980.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057763980.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3446170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C85 |
Chr5:3446477 |
CCT |
C |
2bp_deletion | frameshift_variant | 14 | A15,A19,B131,B19,B22,B44,B55,B78,B91,B94,C30,C44,D1,D4 |
Chr5:3446480 |
G |
GCA |
2bp_insertion | frameshift_variant | 14 | A15,A19,B131,B19,B22,B44,B55,B78,B91,B94,C30,C44,D1,D4 |
Chr5:3446495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C84 |
Chr5:3446621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B11,D11 |
Chr5:3446624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,B35,B50 |
Chr5:3446848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C38 |
Chr5:3446886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B17,B4,C49 |
Chr5:3446893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr5:3447054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B31,B5,B80,C42 |
Chr5:3447060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr5:3447075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763980.1PF00083
Sugar_tr 32-365 aa
PF07690
MFS_1 37-362 aa
PF06609
TRI12 72-208 aa
PF00083
Sugar_tr 451-556 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763980.1 |
Pfam | PF00083 |
Sugar_tr | Family | 32 | 365 | 7.6e-124 | 414.7 | Sugar (and other) transporter |
XP_057763980.1 |
Pfam | PF07690 |
MFS_1 | Family | 37 | 362 | 2.2e-34 | 119.6 | Major Facilitator Superfamily |
XP_057763980.1 |
Pfam | PF06609 |
TRI12 | Family | 72 | 208 | 3.2e-05 | 23.3 | Fungal trichothecene efflux pump (TRI12) |
XP_057763980.1 |
Pfam | PF00083 |
Sugar_tr | Family | 451 | 556 | 7.6e-124 | 414.7 | Sugar (and other) transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。