Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000593`

染色体: Chr05 坐标: 4469970-4473607 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000593`
名称	SmilChr05G000593
描述	floral homeotic protein AGAMOUS-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4469970 - 4473607 / `-`

ID 对照

NCBI Gene ID	`LOC130985319`
GeneID	`130985319`
locus_tag	`-`
NCBI Name	`LOC130985319`
原始查询	`SmilChr05G000593`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	floral homeotic protein AGAMOUS-like
产物	floral homeotic protein AGAMOUS-like
Arabidopsis	`AT4G18960` (AG) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:827631] identity=61; qcov=1.02; evalue=1.52e-106; confidence=high
Rice	`Os01g0201700` (RAG) - identity=60.9; qcov=0.947; evalue=1.16e-96; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:130985319

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764223.1`
2	Chromosome	染色体	0.00000	`XP_057764223.1`
3	Centromere	着丝粒	0.00000	`XP_057764223.1`
4	Chromatin	染色质	0.00000	`XP_057764223.1`
5	Telomere	端粒	0.00000	`XP_057764223.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4470330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B62,C30,C50,C71
`Chr5:4470448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B71,C60,C83
`Chr5:4471161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B42,B43,B83
`Chr5:4471162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B62,C30,C50,C71
`Chr5:4473166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764223.1

261 aa

130

261

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 117-205 aa

XP_057764224.1

261 aa

130

261

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 117-205 aa

XP_057764225.1

260 aa

130

260

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 117-204 aa

XP_057764226.1

244 aa

122

244

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 100-188 aa

XP_057764227.1

243 aa

122

243

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 100-187 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764223.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	1.9e-26	92.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057764223.1`	Pfam	`PF01486`	K-box	Family	117	205	1.6e-23	83.4	K-box region
`XP_057764224.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	1.9e-26	92.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057764224.1`	Pfam	`PF01486`	K-box	Family	117	205	1.6e-23	83.4	K-box region
`XP_057764225.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	1.9e-26	92.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057764225.1`	Pfam	`PF01486`	K-box	Family	117	204	5e-25	88.2	K-box region
`XP_057764226.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	1.7e-26	92.1	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057764226.1`	Pfam	`PF01486`	K-box	Family	100	188	1.3e-23	83.6	K-box region
`XP_057764227.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	1.7e-26	92.1	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057764227.1`	Pfam	`PF01486`	K-box	Family	100	187	4.2e-25	88.4	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057908244.1
AAAAAAAACATCATTTGTTACTTTACACGCGCGAGCGCACACATAAGCCCCTCACTGGAGCTTCATTGTGCCACTTTCTCCATTTCTCTCTCCTTTCAGACAGAAGCCATAATTTTTGAGTTTCAGACAACCAGAGATGGAGGCGCAGAGCGATCAATCAAGGGAGGTCTCGCCGCAGAGGAAAAACGGGAGGGGCAAGATTGCGATAAAGCGGATCGAGAACACGACGAATCGTCAGGTGACATTCTGCAAACGCCGCA...

XM_057908243.1
AAAAAAAACATCATTTGTTACTTTACACGCGCGAGCGCACACATAAGCCCCTCACTGGAGCTTCATTGTGCCACTTTCTCCATTTCTCTCTCCTTTCAGACAGAAGCCATAATTTTTGAGTTTCAGACAACCAGAGATGGAGGCGCAGAGCGATCAATCAAGGGAGGTCTCGCCGCAGAGGAAAAACGGGAGGGGCAAGATTGCGATAAAGCGGATCGAGAACACGACGAATCGTCAGGTGACATTCTGCAAACGCCGCA...

CDS

5 records

下载 CDS FASTA

LOC130985319
ATGGAGGCGCAGAGCGATCAATCAAGGGAGGTCTCGCCGCAGAGGAAAAACGGGAGGGGCAAGATTGCGATAAAGCGGATCGAGAACACGACGAATCGTCAGGTGACATTCTGCAAACGCCGCAACGGACTGCTGAAGAAAGCTTATGAGCTGTCTGTGCTCTGCGATGCCGAGGTTGCTTTAGTCGTCTTCTCTACCAGAGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAAGCTACCATTGAGAGGTACAAGAA...

Protein

5 records

下载 Protein FASTA

XP_057764223.1
MEAQSDQSREVSPQRKNGRGKIAIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNRFSASLRGQPISASTKLSVKATIERYKKASSDSSNHGSISEANSQYYQQESSKLRAQINNTQNHNRQMLGEALGALTLRDLKNLESKVEKGISRIRTKKNELLCAEIEYLQKRQEIEQHHNNQCLRAKIAESSRAHEHMNLMPGGSGGFEFVEQQGYDAPNFLQVMGLQPNEDYTKQEEPQLQL...

XP_057764224.1
MEAQSDQSREVSPQRKNGRGKIAIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNRFSASLRGQPISASTKLSVKATIERYKKASSDSSNHGSISEANSQYYQQESSKLRAQINNTQNHNRQMLGEALGALTLRDLKNLESKVEKGISRIRTKKNELLCAEIEYLQKRQEIEQHHNNQCLRAKIAESSRAHEHMNLMPGGSGGFEFVEQQGYDAPNFLQVMGLQPNEDYTKQEEPQLQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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