当前解析结果
SmilChr05G000813| 统一新 Gene ID | SmilChr05G000813 |
|---|---|
| 名称 | SmilChr05G000813 |
| 描述 | sphingolipid delta(4)-desaturase DES1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6336534 - 6337913 / - |
| NCBI Gene ID | LOC130985526 |
|---|---|
| GeneID | 130985526 |
| locus_tag | - |
| NCBI Name | LOC130985526 |
| 原始查询 | SmilChr05G000813 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sphingolipid delta(4)-desaturase DES1-like |
| 产物 | sphingolipid delta(4)-desaturase DES1-like |
| Arabidopsis | AT4G04930 (DES-1-LIKE)fatty acid desaturase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825832] identity=79.1; qcov=0.958; evalue=0; confidence=high |
| Rice | Os02g0639600- identity=79.5; qcov=0.976; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0042284 (sphingolipid delta-4 desaturase activity); GO:0046513 (ceramide biosynthetic process) |
| KEGG | smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00487 (FA_desaturase); PF08557 (Lipid_DES) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985526 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057764511.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057764511.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057764511.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764511.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764511.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6336736 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B111,C19 |
Chr5:6336736 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B111,C19 |
Chr5:6336768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B47 |
Chr5:6336853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr5:6337012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B14,B88,C36 |
Chr5:6337105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B130,B137,B64,C29 |
Chr5:6337407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr5:6337411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C23 |
Chr5:6337462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr5:6337665 |
C |
CG |
1bp_insertion | frameshift_variant | 4 | B126,B133,C49,C67 |
Chr5:6337665 |
C |
CG |
1bp_insertion | CDS_variant | 4 | B126,B133,C49,C67 |
Chr5:6337716 |
TG |
T |
1bp_deletion | frameshift_variant | 7 | B101,B11,B78,C31,C59,C85,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764511.1PF08557
Lipid_DES 14-48 aa
PF00487
FA_desaturase 72-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764511.1 |
Pfam | PF08557 |
Lipid_DES | Domain | 14 | 48 | 5.7e-20 | 71.2 | Sphingolipid Delta4-desaturase (DES) |
XP_057764511.1 |
Pfam | PF00487 |
FA_desaturase | Domain | 72 | 290 | 9.5e-27 | 95.1 | Fatty acid desaturase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。