当前解析结果
SmilChr05G001072| 统一新 Gene ID | SmilChr05G001072 |
|---|---|
| 名称 | SmilChr05G001072 |
| 描述 | protein DETOXIFICATION 40-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8863706 - 8868645 / - |
| NCBI Gene ID | LOC130985749 |
|---|---|
| GeneID | 130985749 |
| locus_tag | - |
| NCBI Name | LOC130985749 |
| 原始查询 | SmilChr05G001072 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 40-like |
| 产物 | protein DETOXIFICATION 40-like |
| Arabidopsis | AT3G21690 (AT3G21690)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:821723] identity=67.9; qcov=0.888; evalue=0; confidence=high |
| Rice | Os03g0572900 (PEZ2)- identity=66; qcov=0.91; evalue=0; confidence=high |
| GO | GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985749 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057764840.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057764840.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057764840.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764840.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764840.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8863855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C61,C8,D6 |
Chr5:8863991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B83,C10,C84 |
Chr5:8864006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,C20,D4 |
Chr5:8865352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr5:8867759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,C38,C8 |
Chr5:8867831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr5:8868311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B49,B55 |
Chr5:8868383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,C17,C38 |
Chr5:8868426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B25,B77 |
Chr5:8868455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:8868471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B77 |
Chr5:8868591 |
A |
AC |
1bp_insertion | frameshift_variant | 44 | A10,A11,B101,B102,B104,B105,B131,B135,B19,B21,B22,B23,B25,B3,B4,B42,B43,B54,B56,B62,B68,B72,B73,B75,B77,B8,B80,B96,C17,C39,C4,C40,C48,C50,C56,C57,C74,C82,C83,C85,D1,D2,D3,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764840.1PF01554
MatE 91-250 aa
PF01554
MatE 314-474 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764840.1 |
Pfam | PF01554 |
MatE | Family | 91 | 250 | 2.9e-61 | 206.6 | MatE |
XP_057764840.1 |
Pfam | PF01554 |
MatE | Family | 314 | 474 | 2.9e-61 | 206.6 | MatE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。