Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr05G001395`

Chromosome: Chr05 Coordinates: 12514301-12520239 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr05G001395`
Name	SmilChr05G001395
Description	probable WRKY transcription factor 2
Chromosome / SeqID	Chr05 / NC_080391.1
Coordinates and Strand	12514301 - 12520239 / `+`

ID Mapping

NCBI Gene ID	`LOC130986085`
GeneID	`130986085`
locus_tag	`-`
NCBI Name	`LOC130986085`
Original query	`SmilChr05G001395`

Open ID mapping

Reviewed Literature Gene-name Mapping

These entries are manually reviewed mappings between literature gene names and the current reference genome. Confidence reflects mapping evidence strength and does not mean that the reported function has been experimentally validated in this material.

Literature name	Mapping confidence	Mapping evidence	Literature function summary
`SmWRKY2`	medium-high	Website function annotation keyword: probable WRKY transcription factor 2	Critical regulator of JA-induced tanshinone accumulation.

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	probable WRKY transcription factor 2
Product	probable WRKY transcription factor 2
Arabidopsis	`AT5G56270` (WRKY2) WRKY DNA-binding protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:835726] identity=47.7; qcov=1.06; evalue=6.87e-179; confidence=high
Rice	`Os08g0499300` (OsWRKY30) - identity=41.3; qcov=1.03; evalue=3.48e-130; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF03106 (WRKY)
InterPro	-
eggNOG	-
NR	GeneID:130986085

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765344.1`
2	Chromosome	染色体	0.00000	`XP_057765344.1`
3	Centromere	着丝粒	0.00000	`XP_057765344.1`
4	Chromatin	染色质	0.00000	`XP_057765344.1`
5	Telomere	端粒	0.00000	`XP_057765344.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr5:12515749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:12515932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:12515977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr5:12516878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:12516906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr5:12517674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:12517731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C60
`Chr5:12517927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:12517928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,C78,C85
`Chr5:12518441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:12518596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,C44
`Chr5:12518808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,C58

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057765344.1

726 aa

363

726

WRKY

PF03106 WRKY 304-359 aa PF03106 WRKY 514-571 aa

XP_057765345.1

726 aa

363

726

WRKY

PF03106 WRKY 304-359 aa PF03106 WRKY 514-571 aa

XP_057765346.1

726 aa

363

726

WRKY

PF03106 WRKY 304-359 aa PF03106 WRKY 514-571 aa

XP_057765347.1

706 aa

353

706

WRKY

PF03106 WRKY 304-359 aa PF03106 WRKY 514-571 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057765344.1`	Pfam	`PF03106`	WRKY	Domain	304	359	3.7e-52	175.1	WRKY DNA -binding domain
`XP_057765344.1`	Pfam	`PF03106`	WRKY	Domain	514	571	3.7e-52	175.1	WRKY DNA -binding domain
`XP_057765345.1`	Pfam	`PF03106`	WRKY	Domain	304	359	3.7e-52	175.1	WRKY DNA -binding domain
`XP_057765345.1`	Pfam	`PF03106`	WRKY	Domain	514	571	3.7e-52	175.1	WRKY DNA -binding domain
`XP_057765346.1`	Pfam	`PF03106`	WRKY	Domain	304	359	3.7e-52	175.1	WRKY DNA -binding domain
`XP_057765346.1`	Pfam	`PF03106`	WRKY	Domain	514	571	3.7e-52	175.1	WRKY DNA -binding domain
`XP_057765347.1`	Pfam	`PF03106`	WRKY	Domain	304	359	3.4e-52	175.2	WRKY DNA -binding domain
`XP_057765347.1`	Pfam	`PF03106`	WRKY	Domain	514	571	3.4e-52	175.2	WRKY DNA -binding domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

4 records

Download cDNA FASTA

XM_057909361.1
TTAAATTAAATTGATTTCTAATCACAATTTTCGGACAATAAATTAAATTATTTGAATCAGTGCTGATAATTGTCAGTGAGTGAAAGGTTTCTCATGTACTGCTACTACAACTGCTTATTTTCTTTCCAAGAAGATCCAAAAATCGTAACTCCCCAAACAAATCCCACCCTTTTTTTTCTATAGTTTTTTTCTTTTTAAAAAGAAAATCCTTTTGTCTCATCAGCAATCATATTTCTTGCTTACTGGTGAGCCATTTTCTA...

XM_057909364.1
TTAAATTAAATTGATTTCTAATCACAATTTTCGGACAATAAATTAAATTATTTGAATCAGTGCTGATAATTGTCAGTGAGTGAAAGGTTTCTCATGTACTGCTACTACAACTGCTTATTTTCTTTCCAAGAAGATCCAAAAATCGTAACTCCCCAAACAAATCCCACCCTTTTTTTTCTATAGTTTTTTTCTTTTTAAAAAGAAAATCCTTTTGTCTCATCAGCAATCATATTTCTTGCTTACTGGTGAGCCATTTTCTA...

CDS

4 records

Download CDS FASTA

LOC130986085
ATGCCCATGGGTGGATTTGATGATCACGTCGCTATTATGGGAGAATGGATGCCCCCAAGCCCTAATCCGGGGGCCTTTTTCCTATCAATGATGAACGATGATGTTGGAGCACGACTGGCTGTGGAATCTGATAGTGGAAATAGACGTGGGCCTGAACAACAAGGTACCTCCAGAAATGGTGATCAAAAGGATCAGAGTGAAGCTAGTTTCGGAGATGATGAAACCAACAACTGCAAAGCAGCGGGCGAACCAAAGTTGAG...

Protein

4 records

Download Protein FASTA

XP_057765344.1
MPMGGFDDHVAIMGEWMPPSPNPGAFFLSMMNDDVGARLAVESDSGNRRGPEQQGTSRNGDQKDQSEASFGDDETNNCKAAGEPKLSSRGGLMERIAARAGFNAPRLNTENIRPSDLSKKPEVRSPYLTIPPGLSPTTLLDSPVFLSNSLVLPSPTTGKFSFASSGDYRDSTLMIGDSDKGKENNFEDINASSFAFKPITESASFPYLNATNKTFPSAGFTVHSNTSLQRQSIEPTKSHLANNSTLFQEASFSKSDLGNN...

XP_057765345.1
MPMGGFDDHVAIMGEWMPPSPNPGAFFLSMMNDDVGARLAVESDSGNRRGPEQQGTSRNGDQKDQSEASFGDDETNNCKAAGEPKLSSRGGLMERIAARAGFNAPRLNTENIRPSDLSKKPEVRSPYLTIPPGLSPTTLLDSPVFLSNSLVLPSPTTGKFSFASSGDYRDSTLMIGDSDKGKENNFEDINASSFAFKPITESASFPYLNATNKTFPSAGFTVHSNTSLQRQSIEPTKSHLANNSTLFQEASFSKSDLGNN...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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