当前解析结果
SmilChr05G001538| 统一新 Gene ID | SmilChr05G001538 |
|---|---|
| 名称 | SmilChr05G001538 |
| 描述 | probable long-chain-alcohol O-fatty-acyltransferase 5 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14073817 - 14075360 / - |
| NCBI Gene ID | LOC130986230 |
|---|---|
| GeneID | 130986230 |
| locus_tag | - |
| NCBI Name | LOC130986230 |
| 原始查询 | SmilChr05G001538 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable long-chain-alcohol O-fatty-acyltransferase 5 |
| 产物 | probable long-chain-alcohol O-fatty-acyltransferase 5 |
| Arabidopsis | AT5G55350 (AT5G55350)MBOAT (membrane bound O-acyl transferase) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835628] identity=40.9; qcov=0.997; evalue=1.12e-76; confidence=medium |
| Rice | Os02g0454500- identity=38.7; qcov=1.02; evalue=6.11e-70; confidence=medium |
| GO | GO:0006629 (lipid metabolic process); GO:0008374 (GO:0008374) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF13813 (MBOAT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057765553.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057765553.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765553.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765553.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765553.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14073964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:14074150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr5:14074192 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B17 |
Chr5:14074192 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B17 |
Chr5:14074346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr5:14074434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B61,B8,D7 |
Chr5:14074476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:14074673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B65,C50,C8 |
Chr5:14074686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr5:14074708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,A24,C20,D4 |
Chr5:14074770 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C25 |
Chr5:14074770 |
G |
GA |
1bp_insertion | CDS_variant | 1 | C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765553.1PF13813
MBOAT_2 183-266 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765553.1 |
Pfam | PF13813 |
MBOAT_2 | Family | 183 | 266 | 1.2e-14 | 55.1 | Membrane bound O-acyl transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。