Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001606`

染色体: Chr05 坐标: 14803634-14806804 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001606`
名称	SmilChr05G001606
描述	ASC1-like protein
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14803634 - 14806804 / `+`

ID 对照

NCBI Gene ID	`LOC130986288`
GeneID	`130986288`
locus_tag	`-`
NCBI Name	`LOC130986288`
原始查询	`SmilChr05G001606`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ASC1-like protein
产物	ASC1-like protein
Arabidopsis	`AT1G13580` (LAG13) LAG1 longevity assurance-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837919] identity=71.4; qcov=1; evalue=1.95e-164; confidence=high
Rice	`Os02g0581300` - identity=69.2; qcov=0.971; evalue=3.63e-150; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0016020 (membrane); GO:0046513 (ceramide biosynthetic process); GO:0050291 (sphingosine N-acyltransferase activity)
KEGG	smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03798 (TRAM_LAG1_CLN8)
InterPro	-
eggNOG	-
NR	GeneID:130986288

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057765636.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057765636.1`
3	Nucleus	细胞核	0.00000	`XP_057765636.1`
4	Chromosome	染色体	0.00000	`XP_057765636.1`
5	Centromere	着丝粒	0.00000	`XP_057765636.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14804045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B76,C53
`Chr5:14804066`	`G`	`GT`	1bp_insertion	frameshift_variant	1	B134
`Chr5:14804066`	`G`	`GT`	1bp_insertion	CDS_variant	1	B134
`Chr5:14804100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr5:14804931`	`G`	`GA`	1bp_insertion	frameshift_variant	47	A23,A4,A6,B105,B108,B12,B122,B130,B132,B134,B140,B15,B16,B18,B23,B37,B44,B47,B5,B50,B60,B64,B67,B69,B74,B75,B76,B85,B90,B92,B97,C13,C16,C21,C30,C35,C38,C43,C44,C52,C53,C6,C65,C85,D11,D2,D4
`Chr5:14805050`	`G`	`A`	EMS_canonical_SNV	stop_gained	8	A4,A6,B12,B18,B37,B64,B74,B85
`Chr5:14805083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,A8,B27,B35,C43
`Chr5:14806178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B19,C19,C41,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765636.1

308 aa

154

308

TRAM_LAG1_CLN8

PF03798 TRAM_LAG1_CLN8 74-280 aa

XP_057765637.1

308 aa

154

308

TRAM_LAG1_CLN8

PF03798 TRAM_LAG1_CLN8 74-280 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765636.1`	Pfam	`PF03798`	TRAM_LAG1_CLN8	Domain	74	280	1.5e-47	162.9	TLC domain
`XP_057765637.1`	Pfam	`PF03798`	TRAM_LAG1_CLN8	Domain	74	280	1.5e-47	162.9	TLC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909653.1
AAACTAAAATAAAATAAAACATGCTATCTTGGTAATTGAATTTCTCATGTAAGATTATTTGTTAAAGATTCTCCGAATAGGAGGAATCATTAATTATTAACCAAAATAATACAATACCTGTCCGTGATTGGGAGGAGCCGCGTGACAACGGAGACCCGAAGTCAATTATGACTTTGTTGCCAACTCCCAAAAAAACTCAAATCTTTTTATAATCCACCAAAAAAGAAGCACCAAAACTTGCTTCTTTTTAAAGAATTATG...

XM_057909654.1
ATTATTTGTTAAAGATTCTCCGAATAGGAGGAATCATTAATTATTAACCAAAATAATACAATACCTGTCCGTGATTGGGAGGAGCCGCGTGACAACGGAGACCCGAAGTCAATTATGACTTTGTTGCCAACTCCCAAAAAAACTCAAATCTTTTTATAATCCACCAAAAAAGAAGCACCAAAACTTGCTTCTTTTTAAAGAATTATGATTACCCAGTTATCCAGAACTTAAAGATCTTCTTTTTTGTTCTTTTTTGGGAA...

CDS

2 records

下载 CDS FASTA

LOC130986288
ATGGGTCTTCTTGAAATTGCGACTCCGATGGACTGGGAGCACGAATCCTACGCTCAATATGGAGACTTCGTCGCGCTTCCCTTTTTTGCTGTTTTTTTCCCAATTTTGAGATTTTTGCTGGACAGATTTGTATTTGAGAGGGTGGGGAGACGATTGATATTTGGAAAGGGAATGGAAGTGGTAGAAAATGAAACTGAGGAGCGAAAAAAGAAGATACGGAAGTTCAAGGAGTCAGCATGGAAATGTGTATATTTTCTTTC...

Protein

2 records

下载 Protein FASTA

XP_057765636.1
MGLLEIATPMDWEHESYAQYGDFVALPFFAVFFPILRFLLDRFVFERVGRRLIFGKGMEVVENETEERKKKIRKFKESAWKCVYFLSAEILALSVTYNEPWFTKTKYFWEGPGDQSWPDQKYKLKLKGLYMYTGGFYVYSIFALIFWEMRRSDFWVSMGHHFVSSTLIILSYVLRFARVGSMVLALHDATDVFLEIGKMSKYSGAEALASCSFVMFVLFWIILRLIYFPFWILWSTSYELIEYLNKENFKVEGPIYYYIF...

XP_057765637.1
MGLLEIATPMDWEHESYAQYGDFVALPFFAVFFPILRFLLDRFVFERVGRRLIFGKGMEVVENETEERKKKIRKFKESAWKCVYFLSAEILALSVTYNEPWFTKTKYFWEGPGDQSWPDQKYKLKLKGLYMYTGGFYVYSIFALIFWEMRRSDFWVSMGHHFVSSTLIILSYVLRFARVGSMVLALHDATDVFLEIGKMSKYSGAEALASCSFVMFVLFWIILRLIYFPFWILWSTSYELIEYLNKENFKVEGPIYYYIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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