当前解析结果
SmilChr05G001631| 统一新 Gene ID | SmilChr05G001631 |
|---|---|
| 名称 | SmilChr05G001631 |
| 描述 | probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 15234079 - 15237970 / - |
| NCBI Gene ID | LOC130986309 |
|---|---|
| GeneID | 130986309 |
| locus_tag | - |
| NCBI Name | LOC130986309 |
| 原始查询 | SmilChr05G001631 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 |
| 产物 | probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 |
| Arabidopsis | AT5G15860 (PCME)prenylcysteine methylesterase [Source:NCBI gene (formerly Entrezgene);Acc:831443] identity=69.5; qcov=0.8; evalue=0; confidence=high |
| Rice | Os06g0708100 (IMCEL1)- identity=61.2; qcov=0.89; evalue=8.54e-178; confidence=high |
| GO | - |
| KEGG | smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00135 (COesterase); PF07859 (Abhydrolase_3); PF20434 (BD-FAE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986309 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057765668.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057765668.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057765668.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765668.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:15234317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:15234320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B79 |
Chr5:15234326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A2,A7 |
Chr5:15234858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B31,B57,B90,B92 |
Chr5:15234866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B101,B37,B70,C76 |
Chr5:15234892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr5:15236733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B55,B78,C23,D9 |
Chr5:15237141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,D11 |
Chr5:15237781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765668.1PF00135
COesterase 171-279 aa
PF20434
BD-FAE 171-379 aa
PF07859
Abhydrolase_3 188-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765668.1 |
Pfam | PF00135 |
COesterase | Domain | 171 | 279 | 3.4e-13 | 50.1 | Carboxylesterase family |
XP_057765668.1 |
Pfam | PF20434 |
BD-FAE | Domain | 171 | 379 | 2.2e-26 | 93.4 | BD-FAE |
XP_057765668.1 |
Pfam | PF07859 |
Abhydrolase_3 | Domain | 188 | 396 | 1.2e-15 | 58.6 | alpha/beta hydrolase fold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。