当前解析结果
SmilChr05G001745| 统一新 Gene ID | SmilChr05G001745 |
|---|---|
| 名称 | SmilChr05G001745 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 16950788 - 17012130 / + |
| NCBI Gene ID | LOC130986432 |
|---|---|
| GeneID | 130986432 |
| locus_tag | - |
| NCBI Name | LOC130986432 |
| 原始查询 | SmilChr05G001745 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| Arabidopsis | AT1G18390 (AT1G18390)Serine/Threonine kinase family catalytic domain protein [Source:NCBI gene (formerly Entrezgene);Acc:838420] identity=33.3; qcov=0.75; evalue=1.39e-17; confidence=low |
| Rice | Os01g0136450- identity=31.8; qcov=0.932; evalue=1.96e-08; confidence=low |
| GO | GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057765821.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057765821.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765821.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765821.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765821.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:16950971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C16 |
Chr5:16951024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr5:16951082 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B135,C16 |
Chr5:16951082 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B135,C16 |
Chr5:16951095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B35,B77,C60,C71 |
Chr5:16951200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B132,B66 |
Chr5:16951207 |
AT |
A |
1bp_deletion | frameshift_variant | 12 | A2,A21,A6,B140,B20,B42,B43,B82,B93,C15,C58,C78 |
Chr5:16951222 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | B124,B132,B66 |
Chr5:16951222 |
A |
AG |
1bp_insertion | CDS_variant | 3 | B124,B132,B66 |
Chr5:16951260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B35,B77,C60,C71 |
Chr5:16951281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C16 |
Chr5:16951294 |
AC |
A |
1bp_deletion | frameshift_variant | 3 | B124,B132,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765821.1PF13947
GUB_WAK_bind 33-98 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765821.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 33 | 98 | 2.5e-14 | 54.1 | Wall-associated receptor kinase galacturonan-binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。