Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002531`

染色体: Chr05 坐标: 28130389-28135883 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002531`
名称	SmilChr05G002531
描述	phosphatase IMPL1, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28130389 - 28135883 / `-`

ID 对照

NCBI Gene ID	`LOC131026299`
GeneID	`131026299`
locus_tag	`-`
NCBI Name	`LOC131026299`
原始查询	`SmilChr05G002531`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatase IMPL1, chloroplastic
产物	phosphatase IMPL1%2C chloroplastic
Arabidopsis	`AT1G31190` (IMPL1) myo-inositol monophosphatase like 1 [Source:NCBI gene (formerly Entrezgene);Acc:840007] identity=72.8; qcov=1; evalue=0; confidence=high
Rice	`Os02g0169900` (OsIMP-2) - identity=66.1; qcov=0.968; evalue=9.21e-176; confidence=high
GO	GO:0006020 (inositol metabolic process); GO:0007165 (signal transduction); GO:0008934 (inositol monophosphate 1-phosphatase activity); GO:0046854 (phosphatidylinositol phosphate biosynthetic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage))
Pfam	PF00459 (Inositol_P)
InterPro	-
eggNOG	-
NR	GeneID:131026299

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057812110.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057812110.1`
3	Nucleus	细胞核	0.00000	`XP_057812110.1`
4	Chromosome	染色体	0.00000	`XP_057812110.1`
5	Centromere	着丝粒	0.00000	`XP_057812110.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28132008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:28132520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B13,B50,C50
`Chr5:28135592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B37,B7,C60
`Chr5:28135599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812110.1

378 aa

189

378

Inositol_P

PF00459 Inositol_P 95-350 aa

XP_057812111.1

378 aa

189

378

Inositol_P

PF00459 Inositol_P 95-350 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812110.1`	Pfam	`PF00459`	Inositol_P	Family	95	350	4.8e-74	250.0	Inositol monophosphatase family
`XP_057812111.1`	Pfam	`PF00459`	Inositol_P	Family	95	350	4.8e-74	250.0	Inositol monophosphatase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009102239.1
TAACCCTTGGCAGATTTCTTTTTGCAAACATTTCTCTCTCTACCGGAAAAGGAAAAAGAAAACAGAAAAAAACGGAAGTAAATCCTCAATCTTTCCGAAGTATGGGACGGTGCATAATTGCTTCATCATCCACACTCAATCTCACCCGATTATCTCGTAAACCCATTTCAATTCTTCCTTCCGAACTGCCGACCTTCTCGTTTGCTAGGAGCTCGACTGCAAATCCGCGGCCTCTGAAACATGAATTTTATCCAACACTG...

XR_009102238.1
TAACCCTTGGCAGATTTCTTTTTGCAAACATTTCTCTCTCTACCGGAAAAGGAAAAAGAAAACAGAAAAAAACGGAAGTAAATCCTCAATCTTTCCGAAGTATGGGACGGTGCATAATTGCTTCATCATCCACACTCAATCTCACCCGATTATCTCGTAAACCCATTTCAATTCTTCCTTCCGAACTGCCGACCTTCTCGTTTGCTAGGAGCTCGACTGCAAATCCGCGGCCTCTGAAACATGAATTTTATCCAACACTG...

CDS

2 records

下载 CDS FASTA

LOC131026299
ATGGGACGGTGCATAATTGCTTCATCATCCACACTCAATCTCACCCGATTATCTCGTAAACCCATTTCAATTCTTCCTTCCGAACTGCCGACCTTCTCGTTTGCTAGGAGCTCGACTGCAAATCCGCGGCCTCTGAAACATGAATTTTATCCAACACTGCCCTCTGCTTTCAGCTGTAGAAGGGGACTGTGCACGAAAGCTGTTTTATCAGACGTTTCTGAGGAAAAACAGTATTTCAAAGTCGGAGCGGAATCGACGGG...

Protein

2 records

下载 Protein FASTA

XP_057812110.1
MGRCIIASSSTLNLTRLSRKPISILPSELPTFSFARSSTANPRPLKHEFYPTLPSAFSCRRGLCTKAVLSDVSEEKQYFKVGAESTGPIPSDRLLAVIEIAAKTGAQVIMDAVNKPRNITYKGLTDLVTDTDKMSEAAILDVVKKNFQDHLILGEEGGIIGNSSSDYLWCIDPLDGTTNFAHCYPSFAVSIGVLYKGKPAAASVVEFVGGPKCWNTRTFTAAAGKGAFCNGEKIHVSQTDKVERSLLVTGFGYEHNDPWA...

XP_057812111.1
MGRCIIASSSTLNLTRLSRKPISILPSELPTFSFARSSTANPRPLKHEFYPTLPSAFSCRRGLCTKAVLSDVSEEKQYFKVGAESTGPIPSDRLLAVIEIAAKTGAQVIMDAVNKPRNITYKGLTDLVTDTDKMSEAAILDVVKKNFQDHLILGEEGGIIGNSSSDYLWCIDPLDGTTNFAHCYPSFAVSIGVLYKGKPAAASVVEFVGGPKCWNTRTFTAAAGKGAFCNGEKIHVSQTDKVERSLLVTGFGYEHNDPWA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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