Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004241`

染色体: Chr05 坐标: 56227663-56233013 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004241`
名称	SmilChr05G004241
描述	carbonic anhydrase 2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56227663 - 56233013 / `+`

ID 对照

NCBI Gene ID	`LOC131025287`
GeneID	`131025287`
locus_tag	`-`
NCBI Name	`LOC131025287`
原始查询	`SmilChr05G004241`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	carbonic anhydrase 2-like
产物	carbonic anhydrase 2-like
Arabidopsis	`AT5G14740` (CA2) carbonic anhydrase 2 [Source:NCBI gene (formerly Entrezgene);Acc:831326] identity=66; qcov=0.981; evalue=1.72e-120; confidence=high
Rice	`Os01g0639900` (BETACA1) - identity=54.4; qcov=0.739; evalue=2.99e-73; confidence=high
GO	GO:0004089 (carbonate dehydratase activity); GO:0008270 (zinc ion binding); GO:0015976 (carbon utilization)
KEGG	smil00910 (Nitrogen metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00484 (Pro_CA)
InterPro	-
eggNOG	-
NR	GeneID:131025287

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810977.1`
2	Cytoplasm	细胞质	0.80000	`XP_057810978.1`
3	Nucleus	细胞核	0.00000	`XP_057810977.1`
4	Chromosome	染色体	0.00000	`XP_057810977.1`
5	Centromere	着丝粒	0.00000	`XP_057810977.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56228603`	`TG`	`T`	1bp_deletion	frameshift_variant	8	B129,B26,B33,B65,B8,C14,C22,D3
`Chr5:56230466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B18,B35,B65,B68
`Chr5:56231633`	`TCC`	`T`	2bp_deletion	frameshift_variant	4	A10,B118,B64,C30
`Chr5:56231633`	`TCC`	`T`	2bp_deletion	CDS_variant	4	A10,B118,B64,C30
`Chr5:56231643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr5:56231656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B21,B95
`Chr5:56231677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr5:56231868`	`A`	`AC`	1bp_insertion	frameshift_variant	120	A14,A16,A18,A20,A5,A6,A7,A8,A9,B10,B101,B102,B103,B105,B106,B11,B113,B115,B12,B120,B122,B125,B127,B128,B13,B130,B132,B133,B137,B15,B18,B22,B23,B27,B29,B3,B33,B34,B36,B4,B42,B43,B46,B49,B50,B53,B55,B56,B57,B60,B64,B66,B67,B68,B72,B74,B75,B78,B79,B80,B81,B84,B86,B88,B9,B90,B91,B92,B93,B95,B96,C1,C10,C13,C15,C18,C2,C21,C24,C25,C27,C29,C30,C31,C33,C36,C37,C38,C39,C4,C43,C45,C46,C47,C49,C51,C52,C54,C55,C57,C59,C6,C60,C63,C66,C74,C76,C77,C78,C79,C80,C81,C82,C84,C86,D1,D10,D2,D3,D8
`Chr5:56231869`	`A`	`AAC`	2bp_insertion	frameshift_variant	119	A14,A16,A18,A20,A5,A6,A7,A8,A9,B10,B101,B102,B103,B105,B106,B11,B113,B115,B12,B120,B122,B125,B127,B128,B13,B130,B132,B133,B137,B15,B22,B23,B27,B29,B3,B33,B34,B36,B4,B42,B43,B46,B49,B50,B53,B55,B56,B57,B60,B64,B66,B67,B68,B72,B74,B75,B78,B79,B80,B81,B84,B86,B88,B9,B90,B91,B92,B93,B95,B96,C1,C10,C13,C15,C18,C2,C21,C24,C25,C27,C29,C30,C31,C33,C36,C37,C38,C39,C4,C43,C45,C46,C47,C49,C51,C52,C54,C55,C57,C59,C6,C60,C63,C66,C74,C76,C77,C78,C79,C80,C81,C82,C84,C86,D1,D10,D2,D3,D8
`Chr5:56231891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:56232057`	`AGG`	`A`	2bp_deletion	frameshift_variant	2	B53,D3
`Chr5:56232057`	`AGG`	`A`	2bp_deletion	CDS_variant	2	B53,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810977.1

285 aa

142

285

Pro_CA

PF00484 Pro_CA 111-264 aa

XP_057810978.1

264 aa

132

264

Pro_CA

PF00484 Pro_CA 90-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810977.1`	Pfam	`PF00484`	Pro_CA	Domain	111	264	9e-44	150.2	Carbonic anhydrase
`XP_057810978.1`	Pfam	`PF00484`	Pro_CA	Domain	90	243	8.6e-44	150.3	Carbonic anhydrase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954994.1
AAGCCACTCTTCAAATCACATAGCTATCCAATTTCATCCACACCTCAGCACTGAGACACAATCCCAATCCTATTATCATTTTTGTCTCTTAATAAAATAATATAATGTACAATCTTCAAAGCACACGACACCACCAAAACATTCTCTTACTTTGTTCACTATAAGGCTGCAAGAAACTATATAGCTTCTACATATTTATGTTAAAACCATTTTTCTCAGCTCATCACACAAAAGAGAAGCAACCAAGAAGATTCTTAGAG...

XM_057954995.1
AGTTTATATATATATATATATATATATGCATATGTATATTAGAAATAAATAAATATAACAAGAACAAAACACAAACCTGCAATTCAGACAGATATCTCTCACTACTACAGCTTTAATTTGTTTTAGCAGAGGATTCTTCAAAAGAAAGAGGAAATGACGAAGGAGACATGCGACGAAGCCATTGCCGCTCTCCAGAAGCTTCTTAGCGAGAAAGGCGAGCTGAAGGCGGCCGCCGCCGCGAAGGTGCGGCAGTTGACGGC...

CDS

2 records

下载 CDS FASTA

LOC131025287
ATGGCTGCAAAATTGAAGAAATGCATGATGCTATGCTGCACCCGCAAACCTGTGAAAGAGGAAATGACGAAGGAGACATGCGACGAAGCCATTGCCGCTCTCCAGAAGCTTCTTAGCGAGAAAGGCGAGCTGAAGGCGGCCGCCGCCGCGAAGGTGCGGCAGTTGACGGCGGAATTGGCGGGCGCGCGGCGTCAGAATGCGGCGGTTAAGTCGGTTTCCGACCCGGTGGAGGAGAGGATCCGGGCCGGGTTCGATCACTT...

LOC131025287
ATGACGAAGGAGACATGCGACGAAGCCATTGCCGCTCTCCAGAAGCTTCTTAGCGAGAAAGGCGAGCTGAAGGCGGCCGCCGCCGCGAAGGTGCGGCAGTTGACGGCGGAATTGGCGGGCGCGCGGCGTCAGAATGCGGCGGTTAAGTCGGTTTCCGACCCGGTGGAGGAGAGGATCCGGGCCGGGTTCGATCACTTCAAAAAAGAGAAATACGAGAAGGATCCTGCCTTGTACTCGAAGCTAGCCATTGGCCAATCCCC...

Protein

2 records

下载 Protein FASTA

XP_057810977.1
MAAKLKKCMMLCCTRKPVKEEMTKETCDEAIAALQKLLSEKGELKAAAAAKVRQLTAELAGARRQNAAVKSVSDPVEERIRAGFDHFKKEKYEKDPALYSKLAIGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDKTKYSGVGATIEYAVLHLKVENILVIGHSCCGGIKGLMSIPSDGTTKSDFIEDWVKIGKNAKARVETECKNLNFEEKCSKLEREAVNISLGNLLSYPFVKEAVVKKTLMVKGA...

XP_057810978.1
MTKETCDEAIAALQKLLSEKGELKAAAAAKVRQLTAELAGARRQNAAVKSVSDPVEERIRAGFDHFKKEKYEKDPALYSKLAIGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDKTKYSGVGATIEYAVLHLKVENILVIGHSCCGGIKGLMSIPSDGTTKSDFIEDWVKIGKNAKARVETECKNLNFEEKCSKLEREAVNISLGNLLSYPFVKEAVVKKTLMVKGAHYDFVKPSFELWDLDSRLSPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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