Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004350`

染色体: Chr05 坐标: 57109548-57113079 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004350`
名称	SmilChr05G004350
描述	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57109548 - 57113079 / `+`

ID 对照

NCBI Gene ID	`LOC131025401`
GeneID	`131025401`
locus_tag	`-`
NCBI Name	`LOC131025401`
原始查询	`SmilChr05G004350`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
产物	NADH dehydrogenase [ubiquinone] flavoprotein 1%2C mitochondrial
Arabidopsis	`AT5G08530` (CI51) 51 kDa subunit of complex I [Source:NCBI gene (formerly Entrezgene);Acc:830752] identity=92; qcov=0.998; evalue=0; confidence=high
Rice	`Os07g0645400` (P0503D09.102) - identity=95.6; qcov=0.895; evalue=0; confidence=high
GO	GO:0005747 (GO:0005747); GO:0006120 (mitochondrial electron transport, NADH to ubiquinone); GO:0008137 (NADH dehydrogenase (ubiquinone) activity); GO:0010181 (FMN binding); GO:0051287 (NAD binding); GO:0051539 (4 iron, 4 sulfur cluster binding)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01512 (Complex1_51K); PF10531 (SLBB); PF10589 (NADH_4Fe-4S); PF22461 (SLBB_2)
InterPro	-
eggNOG	-
NR	GeneID:131025401

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057811124.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057811124.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057811124.1`
4	Mitochondrion matrix	线粒体基质	0.20000	`XP_057811124.1`
5	Nucleus	细胞核	0.00000	`XP_057811124.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57110943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr5:57111027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B51,B52,C29
`Chr5:57111058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811124.1

487 aa

244

487

Complex1_51K

SLBB_2

SLBB

NADH_4Fe-4S

PF01512 Complex1_51K 103-272 aa PF22461 SLBB_2 297-379 aa PF10531 SLBB 299-346 aa PF10589 NADH_4Fe-4S 388-471 aa

XP_057811125.1

487 aa

244

487

Complex1_51K

SLBB_2

SLBB

NADH_4Fe-4S

PF01512 Complex1_51K 103-272 aa PF22461 SLBB_2 297-379 aa PF10531 SLBB 299-346 aa PF10589 NADH_4Fe-4S 388-471 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811124.1`	Pfam	`PF01512`	Complex1_51K	Domain	103	272	1.2e-45	155.8	Nuo51 FMN-binding domain
`XP_057811124.1`	Pfam	`PF22461`	SLBB_2	Domain	297	379	1.8e-18	67.1	SLBB domain
`XP_057811124.1`	Pfam	`PF10531`	SLBB	Domain	299	346	4.8e-06	27.0	SLBB domain
`XP_057811124.1`	Pfam	`PF10589`	NADH_4Fe-4S	Domain	388	471	1.2e-32	112.4	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
`XP_057811125.1`	Pfam	`PF01512`	Complex1_51K	Domain	103	272	1.2e-45	155.8	Nuo51 FMN-binding domain
`XP_057811125.1`	Pfam	`PF22461`	SLBB_2	Domain	297	379	1.8e-18	67.1	SLBB domain
`XP_057811125.1`	Pfam	`PF10531`	SLBB	Domain	299	346	4.8e-06	27.0	SLBB domain
`XP_057811125.1`	Pfam	`PF10589`	NADH_4Fe-4S	Domain	388	471	1.2e-32	112.4	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955141.1
CTTCACCGTTGATCCTCACATTAGTCAAATCGGAAAAGAAAATCCCATCTCGATCGTCGTTTGCTCATCCTCACCGAAATTATCGTAGGCTTGCCCACATAAGGACTGCCTCAGCTCGCTTTCTATTTCGACTCCTCTCCCACTCTCTCTCTCATCGCCCTCACTTCTCTCTCTCAAGCGCTCGTAATCATATTCGTGGTCTCGGATCAATCGCAGCTGCTCTGCTTGTACAATTTTGATGCCATCATGGCTCCTATGAA...

XM_057955142.1
CACCGAAATTATCGTAGGCTTGCCCACATAAGGACTGCCTCAGCTCGCTTTCTATTTCGACTCCTCTCCCACTCTCTCTCTCATCGCCCTCACTTCTCTCTCTCAAGCGCTCGTAATCATATTCGTGGTCTCGGATCAATCGCAGCTGCTCTGCTTGTACAATTTTGATGCCATCATGGCTCCTATGAAGGGCATCCTTTCTCTACAAAAGACTGCTTTTGTCCAGCGCTCCAGTGAGAATTTGGGCCTCGTGCGTAGAT...

CDS

2 records

下载 CDS FASTA

LOC131025401
ATGGCTCCTATGAAGGGCATCCTTTCTCTACAAAAGACTGCTTTTGTCCAGCGCTCCAGTGAGAATTTGGGCCTCGTGCGTAGATTACTTAGCACACAGGCTGCTACAACTTCTGCCACGCCACAGCCTCCGCCCCCTCCGCCCCCTCCAGAGAAGACCCACTTTGGCGGCCTGAAAGATGAGGATCGCATATTCACTAACGTATATGGTTTGCATGATCCGTTCCTGAAAGGTGCAATGAAACGTGGAGACTGGTACAG...

Protein

2 records

下载 Protein FASTA

XP_057811124.1
MAPMKGILSLQKTAFVQRSSENLGLVRRLLSTQAATTSATPQPPPPPPPPEKTHFGGLKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVVKGADWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKASDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARKEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYG...

XP_057811125.1
MAPMKGILSLQKTAFVQRSSENLGLVRRLLSTQAATTSATPQPPPPPPPPEKTHFGGLKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVVKGADWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKASDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARKEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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