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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000234

染色体: Chr06 坐标: 1566176-1571061 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000234
名称SmilChr06G000234
描述zinc finger CCCH domain-containing protein 67-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向1566176 - 1571061 / +

ID 对照

NCBI Gene IDLOC130987798
GeneID130987798
locus_tag-
NCBI NameLOC130987798
原始查询SmilChr06G000234

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger CCCH domain-containing protein 67-like
产物zinc finger CCCH domain-containing protein 67-like
ArabidopsisAT3G48440 (AT3G48440)
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:824003]
identity=48.5; qcov=0.781; evalue=3.62e-117; confidence=high
RiceOs12g0278800 (OsC3H65)
-
identity=46.8; qcov=0.588; evalue=5.05e-72; confidence=medium
GOGO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG-
PfamPF00642 (zf-CCCH); PF14608 (zf-CCCH_2); PF18044 (zf-CCCH_4)
InterPro-
eggNOG-
NRGeneID:130987798

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057767463.1
2 Cytoplasm 细胞质 0.40000 XP_057767463.1
3 Chromosome 染色体 0.00000 XP_057767464.1
4 Centromere 着丝粒 0.00000 XP_057767464.1
5 Chromatin 染色质 0.00000 XP_057767464.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:1566669 G A EMS_canonical_SNV CDS_variant 3 B125,B83,C87
Chr6:1566724 G A EMS_canonical_SNV CDS_variant 1 C48
Chr6:1566770 C T EMS_canonical_SNV CDS_variant 2 B9,C43
Chr6:1566902 G A EMS_canonical_SNV CDS_variant 1 C61
Chr6:1566997 G A EMS_canonical_SNV CDS_variant 2 A18,C9
Chr6:1567079 C T EMS_canonical_SNV CDS_variant 1 D4
Chr6:1567115 G A EMS_canonical_SNV CDS_variant 2 A21,B1
Chr6:1567332 G A EMS_canonical_SNV CDS_variant 5 A16,B26,B50,B69,C4
Chr6:1567774 G A EMS_canonical_SNV CDS_variant 1 C9
Chr6:1567782 C T EMS_canonical_SNV CDS_variant 2 B93,C51
Chr6:1567805 CAG C 2bp_deletion frameshift_variant 1 B67
Chr6:1567805 CAG C 2bp_deletion CDS_variant 1 B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767463.1
512 aa
N
1
256
512
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH_4
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 170-194 aa PF14608 zf-CCCH_2 172-193 aa PF00642 zf-CCCH 217-240 aa PF14608 zf-CCCH_2 220-240 aa PF00642 zf-CCCH 263-287 aa PF14608 zf-CCCH_2 266-286 aa PF18044 zf-CCCH_4 266-286 aa PF00642 zf-CCCH 396-422 aa PF14608 zf-CCCH_2 401-421 aa
XP_057767464.1
502 aa
N
1
251
502
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 170-194 aa PF14608 zf-CCCH_2 172-193 aa PF00642 zf-CCCH 217-240 aa PF14608 zf-CCCH_2 220-240 aa PF00642 zf-CCCH 263-287 aa PF14608 zf-CCCH_2 266-286 aa PF18044 zf-CCCH_4 266-286 aa PF00642 zf-CCCH 396-422 aa PF14608 zf-CCCH_2 401-421 aa PF00642 zf-CCCH 445-469 aa PF14608 zf-CCCH_2 448-469 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057767463.1 Pfam PF00642 zf-CCCH Family 170 194 8.2e-33 112.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767463.1 Pfam PF14608 zf-CCCH_2 Domain 172 193 1.1e-11 45.5 RNA-binding, Nab2-type zinc finger
XP_057767463.1 Pfam PF00642 zf-CCCH Family 217 240 8.2e-33 112.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767463.1 Pfam PF14608 zf-CCCH_2 Domain 220 240 1.1e-11 45.5 RNA-binding, Nab2-type zinc finger
XP_057767463.1 Pfam PF00642 zf-CCCH Family 263 287 8.2e-33 112.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767463.1 Pfam PF14608 zf-CCCH_2 Domain 266 286 1.1e-11 45.5 RNA-binding, Nab2-type zinc finger
XP_057767463.1 Pfam PF18044 zf-CCCH_4 Domain 266 286 3.8e-13 49.6 CCCH-type zinc finger
XP_057767463.1 Pfam PF00642 zf-CCCH Family 396 422 8.2e-33 112.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767463.1 Pfam PF14608 zf-CCCH_2 Domain 401 421 1.1e-11 45.5 RNA-binding, Nab2-type zinc finger
XP_057767464.1 Pfam PF00642 zf-CCCH Family 170 194 1.8e-41 140.0 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767464.1 Pfam PF14608 zf-CCCH_2 Domain 172 193 3.9e-15 56.4 RNA-binding, Nab2-type zinc finger
XP_057767464.1 Pfam PF00642 zf-CCCH Family 217 240 1.8e-41 140.0 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767464.1 Pfam PF14608 zf-CCCH_2 Domain 220 240 3.9e-15 56.4 RNA-binding, Nab2-type zinc finger
XP_057767464.1 Pfam PF00642 zf-CCCH Family 263 287 1.8e-41 140.0 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767464.1 Pfam PF14608 zf-CCCH_2 Domain 266 286 3.9e-15 56.4 RNA-binding, Nab2-type zinc finger
XP_057767464.1 Pfam PF18044 zf-CCCH_4 Domain 266 286 6.9e-15 55.1 CCCH-type zinc finger
XP_057767464.1 Pfam PF00642 zf-CCCH Family 396 422 1.8e-41 140.0 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767464.1 Pfam PF14608 zf-CCCH_2 Domain 401 421 3.9e-15 56.4 RNA-binding, Nab2-type zinc finger
XP_057767464.1 Pfam PF00642 zf-CCCH Family 445 469 1.8e-41 140.0 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057767464.1 Pfam PF14608 zf-CCCH_2 Domain 448 469 3.9e-15 56.4 RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057911480.1
ATAAAATAAAATAAGAGAGAGTAACAATTAATGTGTCACAAACTTTGCAAAGAACTCATAAACCTCTAATCTTCTAAATTTTAGATAAATCTAGTGTATTTTCTTATACCCAGAAACCCAGAAAAGTAAAAAGATTATTCCTCATTCACACACATATCCATAGCCTATATGTGTAGAGAGAGAAAAAAAAGTGGCAGTTTGCGTCTCTCCTCCATTCAGCTCTGTCCCCAGTCAGTAAATACTGGACTCCACACACACAC...
XM_057911481.1
ATAAAATAAAATAAGAGAGAGTAACAATTAATGTGTCACAAACTTTGCAAAGAACTCATAAACCTCTAATCTTCTAAATTTTAGATAAATCTAGTGTATTTTCTTATACCCAGAAACCCAGAAAAGTAAAAAGATTATTCCTCATTCACACACATATCCATAGCCTATATGTGTAGAGAGAGAAAAAAAAGTGGCAGTTTGCGTCTCTCCTCCATTCAGCTCTGTCCCCAGTCAGTAAATACTGGACTCCACACACACAC...

CDS

2 records

下载 CDS FASTA
LOC130987798
ATGGCTGAATCACCATCATCAACCTCTGAAAAACCCCCAATTGTGAAGGTAGGGTTAGGGTTTTTGGTCGAGGACACGCCACCGTCCGATCCGATCAAGCCTGAGCCCGAAATTGTTGAGATCCAGCAGCCCGAGGCTCCCGAAAATGCCCCTGGTGAGGGGAGTGATCCGCCGACGGCGGTGATGGAGGAGGTGGTCGGCGAAACCGCCGCCCCCGATGAAGAGGCGGAATTTCTTAATGCTATTGAGAGAGACTTGTG...
LOC130987798
ATGGCTGAATCACCATCATCAACCTCTGAAAAACCCCCAATTGTGAAGGTAGGGTTAGGGTTTTTGGTCGAGGACACGCCACCGTCCGATCCGATCAAGCCTGAGCCCGAAATTGTTGAGATCCAGCAGCCCGAGGCTCCCGAAAATGCCCCTGGTGAGGGGAGTGATCCGCCGACGGCGGTGATGGAGGAGGTGGTCGGCGAAACCGCCGCCCCCGATGAAGAGGCGGAATTTCTTAATGCTATTGAGAGAGACTTGTG...

Protein

2 records

下载 Protein FASTA
XP_057767463.1
MAESPSSTSEKPPIVKVGLGFLVEDTPPSDPIKPEPEIVEIQQPEAPENAPGEGSDPPTAVMEEVVGETAAPDEEAEFLNAIERDLCELTIQQAHIERLVCIDEEKGDHLGTQKDGKDSESGEYENEIDEGDEDKEGSVAINFGDGASKLGRFNQNNSRRKVNYPMRPDAEDCAFYMKFGSCKFGLNCKFNHPPRRKNQNVKERTNHKEENSERGGQTECKYYLTSGGCKYGKDCKYSHGSDRSSSSQMPEFNFLGLPLR...
XP_057767464.1
MAESPSSTSEKPPIVKVGLGFLVEDTPPSDPIKPEPEIVEIQQPEAPENAPGEGSDPPTAVMEEVVGETAAPDEEAEFLNAIERDLCELTIQQAHIERLVCIDEEKGDHLGTQKDGKDSESGEYENEIDEGDEDKEGSVAINFGDGASKLGRFNQNNSRRKVNYPMRPDAEDCAFYMKFGSCKFGLNCKFNHPPRRKNQNVKERTNHKEENSERGGQTECKYYLTSGGCKYGKDCKYSHGSDRSSSSQMPEFNFLGLPLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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