当前解析结果
SmilChr06G001440| 统一新 Gene ID | SmilChr06G001440 |
|---|---|
| 名称 | SmilChr06G001440 |
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15208420 - 15213519 / - |
| NCBI Gene ID | LOC130990130 |
|---|---|
| GeneID | 130990130 |
| locus_tag | - |
| NCBI Name | LOC130990130 |
| 原始查询 | SmilChr06G001440 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like |
| 产物 | 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like |
| Arabidopsis | AT3G57650 (LPAT2)lysophosphatidyl acyltransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:824934] identity=72.8; qcov=0.989; evalue=0; confidence=high |
| Rice | Os11g0637800- identity=68.5; qcov=0.941; evalue=9.84e-172; confidence=high |
| GO | GO:0003841 (1-acylglycerol-3-phosphate O-acyltransferase activity); GO:0012505 (endomembrane system) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase); PF16076 (Acyltransf_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990130 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057770313.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057770313.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057770313.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770313.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770313.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15208768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr6:15208915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:15209022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B109 |
Chr6:15212718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,B65,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770313.1PF01553
Acyltransferase 83-228 aa
PF16076
Acyltransf_C 239-311 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770313.1 |
Pfam | PF01553 |
Acyltransferase | Family | 83 | 228 | 2.4e-14 | 54.0 | Acyltransferase |
XP_057770313.1 |
Pfam | PF16076 |
Acyltransf_C | Family | 239 | 311 | 4.7e-24 | 84.8 | Acyltransferase C-terminus |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。